Gene info for mRNA_5520 in Rhodosporidium toruloides IFO0880

mRNA_5520 13888: KOG0297 TNF receptor-associated factor

Type 1: Protein-coding gene
Located on scaffold scaffold_5, - strand, nucleotides 290,297 to 291,417

Links: MicrobesOnline

Nearby Genes

500 nt mRNA_5515: 13883 - K02738 PSMB6 20S proteasome subunit beta 1, at 275180 to 276108 13883 mRNA_5516: 13884 - Hypothetical Protein, at 276264 to 277474 13884 mRNA_5517: 13885 - PRINTS-Proline rich extensin signature-PR01217, at 280339 to 282741 13885 mRNA_5518: 13886 - SUPERFAMILY--SSF49599, at 287492 to 288002 13886 mRNA_5519: 13887 - HMMPfam-TRAF-type zinc finger-PF02176,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145, at 288669 to 289832 13887 mRNA_5520: 13888 - KOG0297 TNF receptor-associated factor, at 290297 to 291417 13888 mRNA_5521: 13889 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 291900 to 293030 13889 mRNA_5522: 13890 - ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145, at 293520 to 294673 13890 mRNA_5523: 13891 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF57850, at 295158 to 296227 13891 mRNA_5524: 13892 - KOG3002 Zn finger protein, at 297072 to 298317 13892 mRNA_5525: 13893 - HMMPfam-Xyloglucan fucosyltransferase-PF03254, at 299170 to 301469 13893
Locus Name Description Strand Distance (nt) Phenotype
mRNA_5515 13883 K02738 PSMB6 20S proteasome subunit beta 1 + no data
mRNA_5516 13884 Hypothetical Protein - 156 cofit
mRNA_5517 13885 PRINTS-Proline rich extensin signature-PR01217 + 2865 cofit
mRNA_5518 13886 SUPERFAMILY--SSF49599 - 4751 cofit
mRNA_5519 13887 HMMPfam-TRAF-type zinc finger-PF02176,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145 - 667 cofit
mRNA_5520 13888 KOG0297 TNF receptor-associated factor - 465 cofit
mRNA_5521 13889 ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850 - 483 cofit
mRNA_5522 13890 ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145 - 490 insig.
mRNA_5523 13891 ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF57850 - 485 cofit
mRNA_5524 13892 KOG3002 Zn finger protein - 845 cofit
mRNA_5525 13893 HMMPfam-Xyloglucan fucosyltransferase-PF03254 + 853 cofit