Gene mRNA_5474 in Rhodosporidium toruloides IFO0880

mRNA_5474 13842: HMMPfam-Mitochondrial ATP synthase epsilon chain-PF04627,SUPERFAMILY--SSF48690 in Rhodosporidium toruloides IFO0880

Type 1: Protein-coding gene
Located on scaffold scaffold_5, + strand, nucleotides 180,960 to 181,593

Links: MicrobesOnline

Nearby Genes

500 nt mRNA_5469: 13837 - HMMPfam-Bacteriorhodopsin-like protein-PF01036,PRINTS-Bacterial opsin signature-PR00251,ProSitePatterns-Bacterial rhodopsins retinal binding site.-PS00327,ProSitePatterns-Bacterial rhodopsins signature 1.-PS00950,SMART-Bacteriorhodopsin-like protein-SM01021,SUPERFAMILY--SSF81321, at 167116 to 168617 13837 mRNA_5470: 13838 - K00599 METTL6 methyltransferase-like protein 6, at 168838 to 170246 13838 mRNA_5471: 13839 - KOG4696 Uncharacterized conserved protein, at 170763 to 172785 13839 mRNA_5472: 13840 - K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase, at 173167 to 176789 13840 mRNA_5473: 13841 - KOG2226 Proteins containing regions of low-complexity, at 176927 to 180681 13841 mRNA_5474: 13842 - HMMPfam-Mitochondrial ATP synthase epsilon chain-PF04627,SUPERFAMILY--SSF48690, at 180960 to 181593 13842 mRNA_5475: 13843 - KOG0084 GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins, at 181752 to 183361 13843 mRNA_5476: 13844 - KOG4719 Nuclear pore complex protein, at 183800 to 188314 13844 mRNA_5477: 13845 - K20179 VPS11, PEP5 vacuolar protein sorting-associated protein 11, at 188584 to 192714 13845 mRNA_5478: 13846 - SUPERFAMILY--SSF81383, at 192866 to 194409 13846 mRNA_5479: 13847 - KOG3070 Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing, at 194806 to 195878 13847
Locus Name Description Strand Distance (nt) Phenotype
mRNA_5469 13837 HMMPfam-Bacteriorhodopsin-like protein-PF01036,PRINTS-Bacterial opsin signature-PR00251,ProSitePatterns-Bacterial rhodopsins retinal binding site.-PS00327,ProSitePatterns-Bacterial rhodopsins signature 1.-PS00950,SMART-Bacteriorhodopsin-like protein-SM01021,SUPERFAMILY--SSF81321 + cofit
mRNA_5470 13838 K00599 METTL6 methyltransferase-like protein 6 - 221 cofit
mRNA_5471 13839 KOG4696 Uncharacterized conserved protein + 517 insig.
mRNA_5472 13840 K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase + 382 no data
mRNA_5473 13841 KOG2226 Proteins containing regions of low-complexity - 138 cofit
mRNA_5474 13842 HMMPfam-Mitochondrial ATP synthase epsilon chain-PF04627,SUPERFAMILY--SSF48690 + 279 no data
mRNA_5475 13843 KOG0084 GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins + 159 cofit
mRNA_5476 13844 KOG4719 Nuclear pore complex protein + 439 cofit
mRNA_5477 13845 K20179 VPS11, PEP5 vacuolar protein sorting-associated protein 11 + 270 cofit
mRNA_5478 13846 SUPERFAMILY--SSF81383 + 152 cofit
mRNA_5479 13847 KOG3070 Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing - 397 insig.