Gene info for mRNA_5335 in Rhodosporidium toruloides IFO0880

mRNA_5335 13703: HMMPfam-Domain of unknown function (DUF4202)-PF13875

Type 1: Protein-coding gene
Located on scaffold scaffold_4, + strand, nucleotides 481,630 to 482,657

Links: MicrobesOnline

Nearby Genes

500 nt mRNA_5330: 13698 - BLAST ZYRO0C04598p [Zygosaccharomyces rouxii], at 471272 to 473464 13698 mRNA_5331: 13699 - SUPERFAMILY--SSF52047, at 473951 to 475290 13699 mRNA_5332: 13700 - K01904 4CL 4-coumarate--CoA ligase, at 475424 to 477955 13700 mRNA_5333: 13701 - ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SUPERFAMILY--SSF69065, at 478191 to 479250 13701 mRNA_5334: 13702 - K14563 NOP1, FBL rRNA 2'-O-methyltransferase fibrillarin, at 479497 to 481330 13702 mRNA_5335: 13703 - HMMPfam-Domain of unknown function (DUF4202)-PF13875, at 481630 to 482657 13703 mRNA_5336: 13704 - K14777 DDX47, RRP3 ATP-dependent RNA helicase DDX47/RRP3, at 482937 to 484688 13704 mRNA_5337: 13705 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 484904 to 487998 13705 mRNA_5338: 13706 - K00891 E2.7.1.71, aroK, aroL shikimate kinase, at 488482 to 491424 13706 mRNA_5339: 13707 - KOG4771 Nucleolar protein (NOP16) involved in 60S ribosomal subunit biogenesis, at 491578 to 492823 13707 mRNA_5340: 13708 - K01092 E3.1.3.25, IMPA, suhB myo-inositol-1(or 4)-monophosphatase, at 493002 to 494592 13708
Locus Name Description Strand Distance (nt) Phenotype
mRNA_5330 13698 BLAST ZYRO0C04598p [Zygosaccharomyces rouxii] - cofit
mRNA_5331 13699 SUPERFAMILY--SSF52047 + 487 insig.
mRNA_5332 13700 K01904 4CL 4-coumarate--CoA ligase + 134 cofit
mRNA_5333 13701 ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SUPERFAMILY--SSF69065 - 236 insig.
mRNA_5334 13702 K14563 NOP1, FBL rRNA 2'-O-methyltransferase fibrillarin - 247 cofit
mRNA_5335 13703 HMMPfam-Domain of unknown function (DUF4202)-PF13875 + 300 cofit
mRNA_5336 13704 K14777 DDX47, RRP3 ATP-dependent RNA helicase DDX47/RRP3 + 280 no data
mRNA_5337 13705 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701 - 216 cofit
mRNA_5338 13706 K00891 E2.7.1.71, aroK, aroL shikimate kinase + 484 cofit
mRNA_5339 13707 KOG4771 Nucleolar protein (NOP16) involved in 60S ribosomal subunit biogenesis - 154 no data
mRNA_5340 13708 K01092 E3.1.3.25, IMPA, suhB myo-inositol-1(or 4)-monophosphatase - 179 cofit