Gene info for mRNA_3744 in Rhodosporidium toruloides IFO0880

mRNA_3744 12112: KOG0955 PHD finger protein BR140/LIN-49

Type 1: Protein-coding gene
Located on scaffold scaffold_2, + strand, nucleotides 479,560 to 485,967

Links: MicrobesOnline

Nearby Genes

500 nt mRNA_3739: 12107 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,ProSiteProfiles-Expansin, family-45 endoglucanase-like domain profile.-PS50842,SUPERFAMILY--SSF50685, at 468433 to 469585 12107 mRNA_3740: 12108 - Hypothetical Protein, at 469899 to 470347 12108 mRNA_3741: 12109 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 470340 to 473925 12109 mRNA_3742: 12110 - SMART-Parallel beta-helix repeats-SM00710,SUPERFAMILY--SSF51126, at 474492 to 476469 12110 mRNA_3743: 12111 - K15289 SLC35F5 solute carrier family 35, member F5, at 476780 to 478513 12111 mRNA_3744: 12112 - KOG0955 PHD finger protein BR140/LIN-49, at 479560 to 485967 12112 mRNA_3745: 12113 - BLAST protein of unknown function [Taphrina deformans PYCC ..., at 486209 to 486880 12113 mRNA_3746: 12114 - Hypothetical Protein, at 487127 to 488004 12114 mRNA_3747: 12115 - Hypothetical Protein, at 488754 to 489655 12115 mRNA_3748: 12116 - K00658 DLST, sucB 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase), at 490464 to 492382 12116 mRNA_3749: 12117 - HMMPfam-Nuclear pore complex assembly-PF13934,SUPERFAMILY--SSF57850, at 492760 to 497695 12117
Locus Name Description Strand Distance (nt) Phenotype
mRNA_3739 12107 HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,ProSiteProfiles-Expansin, family-45 endoglucanase-like domain profile.-PS50842,SUPERFAMILY--SSF50685 + cofit
mRNA_3740 12108 Hypothetical Protein + 314 cofit
mRNA_3741 12109 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 + -7 cofit
mRNA_3742 12110 SMART-Parallel beta-helix repeats-SM00710,SUPERFAMILY--SSF51126 + 567 cofit
mRNA_3743 12111 K15289 SLC35F5 solute carrier family 35, member F5 - 311 cofit
mRNA_3744 12112 KOG0955 PHD finger protein BR140/LIN-49 + 1047 cofit
mRNA_3745 12113 BLAST protein of unknown function [Taphrina deformans PYCC ... - 242 cofit
mRNA_3746 12114 Hypothetical Protein + 247 cofit
mRNA_3747 12115 Hypothetical Protein + 750 insig.
mRNA_3748 12116 K00658 DLST, sucB 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) - 809 no data
mRNA_3749 12117 HMMPfam-Nuclear pore complex assembly-PF13934,SUPERFAMILY--SSF57850 + 378 cofit