Experiment setAYPD_YPD for Rhodosporidium toruloides IFO0880

Compare to:

YPD

200 most important genes:

  gene name fitness t score description  
mRNA_1285 9653 -3.2 -3.0 Interpro Ribosomal protein 60S L18 and 50S L18e 0 compare
mRNA_3601 11969 -2.9 -0.9 K11367 CHD1 chromodomain-helicase-DNA-binding protein 1 compare
mRNA_915 9283 -2.8 -1.2 K01950 E6.3.5.1, NADSYN1, QNS1, nadE NAD+ synthase (glutamine-hydrolysing) compare
mRNA_7823 16191 -2.7 -2.0 K03011 RPB3, POLR2C DNA-directed RNA polymerase II subunit RPB3 compare
mRNA_2587 10955 -2.6 -1.6 K04368 MAP2K1, MEK1 mitogen-activated protein kinase kinase 1 compare
mRNA_1299 9667 -2.5 -0.8 K00600 glyA, SHMT glycine hydroxymethyltransferase compare
mRNA_4961 13329 -2.5 -0.8 Hypothetical Protein compare
mRNA_5550 13918 -2.5 -1.3 K09424 REB1 Myb-like DNA-binding protein REB1 compare
mRNA_3019 11387 -2.4 -1.5 KOG2128 Ras GTPase-activating protein family - IQGAP compare
mRNA_3639 12007 -2.4 -1.0 K11204 GCLC glutamate--cysteine ligase catalytic subunit compare
mRNA_8440 16808 -1.9 -0.8 Hypothetical Protein compare
mRNA_1864 10232 -1.9 -1.5 SUPERFAMILY--SSF53300 compare
mRNA_7083 15451 -1.8 -2.1 K18803 HPM1 protein-histidine N-methyltransferase compare
mRNA_6610 14978 -1.8 -1.6 BLAST related to MSL5-branch point bridging protein [Sporis... compare
mRNA_8099 16467 -1.8 -0.6 HMMPfam-SUR7/PalI family-PF06687 compare
mRNA_7759 16127 -1.7 -3.0 K11824 AP2A AP-2 complex subunit alpha compare
mRNA_3313 11681 -1.7 -1.8 K00030 IDH3 isocitrate dehydrogenase (NAD+) compare
mRNA_8135 16503 -1.7 -2.9 K00804 GGPS1 geranylgeranyl diphosphate synthase, type III compare
mRNA_8470 16838 -1.7 -2.0 Hypothetical Protein compare
mRNA_4518 12886 -1.7 -1.2 Hypothetical Protein compare
mRNA_6293 14661 -1.7 -2.9 K18467 VPS29 vacuolar protein sorting-associated protein 29 compare
mRNA_1840 10208 -1.7 -0.6 Hypothetical Protein compare
mRNA_2688 11056 -1.7 -2.0 Hypothetical Protein compare
mRNA_6791 15159 -1.6 -1.8 K00888 PI4KA phosphatidylinositol 4-kinase A compare
mRNA_7657 16025 -1.6 -3.0 KOG2743 Cobalamin synthesis protein compare
mRNA_6516 14884 -1.6 -1.5 Hypothetical Protein compare
mRNA_7103 15471 -1.6 -1.3 Hypothetical Protein compare
mRNA_7855 16223 -1.5 -1.7 K15443 TRM82, WDR4 tRNA (guanine-N(7)-)-methyltransferase subunit TRM82 compare
mRNA_4299 12667 -1.5 -0.7 K12617 PATL1, PAT1 DNA topoisomerase 2-associated protein PAT1 compare
mRNA_8325 16693 -1.5 -0.8 KOG1688 Golgi proteins involved in ER retention (RER) compare
mRNA_2111 10479 -1.5 -0.7 K10575 UBE2G1, UBC7 ubiquitin-conjugating enzyme E2 G1 compare
mRNA_3354 11722 -1.5 -1.1 KOG2395 Protein involved in vacuole import and degradation compare
mRNA_7790 16158 -1.5 -1.0 Hypothetical Protein compare
mRNA_4345 12713 -1.5 -2.3 K04706 PIAS1 E3 SUMO-protein ligase PIAS1 compare
mRNA_2993 11361 -1.5 -2.1 HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685 compare
mRNA_4110 12478 -1.5 -1.3 BLAST metal resistance protein ycf1 [Trichosporon asahii va... compare
mRNA_4065 12433 -1.5 -0.9 KOG1198 Zinc-binding oxidoreductase compare
mRNA_5912 14280 -1.4 -0.9 K11375 ELP4 elongator complex protein 4 compare
mRNA_6368 14736 -1.4 -1.5 KOG2049 Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) compare
mRNA_2592 10960 -1.4 -1.8 HMMPfam-Protein of unknown function (DUF1762)-PF08574 compare
mRNA_313 8681 -1.4 -0.8 Hypothetical Protein compare
mRNA_2327 10695 -1.4 -2.9 Hypothetical Protein compare
mRNA_3453 11821 -1.4 -0.7 KOG2959 Transcriptional regulator compare
mRNA_7391 15759 -1.4 -1.5 K00547 mmuM, BHMT2 homocysteine S-methyltransferase compare
mRNA_1130 9498 -1.4 -1.4 KOG1773 Stress responsive protein compare
mRNA_6285 14653 -1.4 -0.3 K05610 UCHL5, UCH37 ubiquitin carboxyl-terminal hydrolase L5 compare
mRNA_4973 13341 -1.3 -0.4 K18466 VPS26 vacuolar protein sorting-associated protein 26 compare
mRNA_5693 14061 -1.3 -2.7 KOG4186 Peroxisomal biogenesis protein (peroxin) compare
mRNA_481 8849 -1.3 -3.3 K11756 RSC1_2 chromatin structure-remodeling complex subunit RSC1/2 compare
mRNA_8400 16768 -1.3 -2.0 K12189 VPS25, EAP20 ESCRT-II complex subunit VPS25 compare
mRNA_8255 16623 -1.3 -3.0 K01792 E5.1.3.15 glucose-6-phosphate 1-epimerase compare
mRNA_6443 14811 -1.3 -0.5 K10427 DCTN5 dynactin 5 compare
mRNA_2360 10728 -1.3 -1.7 Hypothetical Protein compare
mRNA_5251 13619 -1.3 -1.8 K12867 SYF1, XAB2 pre-mRNA-splicing factor SYF1 compare
mRNA_8008 16376 -1.3 -1.5 BLAST CAMK/CAMKL protein kinase [Microbotryum lychnidis-dio... compare
mRNA_1034 9402 -1.3 -1.8 SMART-N-terminal domain of CBF1 interacting co-repressor CIR-SM01083 compare
mRNA_3597 11965 -1.3 -1.4 K15562 BUR1, SGV1 serine/threonine-protein kinase BUR1 compare
mRNA_5363 13731 -1.3 -0.8 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_1508 9876 -1.3 -2.6 KOG3140 Predicted membrane protein compare
mRNA_6528 14896 -1.2 -2.1 K01514 PRUNE, PPX1 exopolyphosphatase compare
mRNA_5918 14286 -1.2 -1.4 K11498 CENPE centromeric protein E compare
mRNA_4899 13267 -1.2 -2.1 KOG4705 Uncharacterized conserved protein compare
mRNA_6385 14753 -1.2 -0.7 K03107 SRP68 signal recognition particle subunit SRP68 compare
mRNA_1480 9848 -1.2 -0.7 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_963 9331 -1.2 -2.7 K15109 SLC25A20_29, CACT, CACL, CRC1 solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29 compare
mRNA_1214 9582 -1.2 -0.7 Hypothetical Protein compare
mRNA_2485 10853 -1.2 -0.8 K07760 CDK cyclin-dependent kinase compare
mRNA_3727 12095 -1.2 -1.8 SMART-Leucine rich repeat, ribonuclease inhibitor type-SM00368,SUPERFAMILY--SSF52047 compare
mRNA_2233 10601 -1.2 -0.8 Hypothetical Protein compare
mRNA_6400 14768 -1.2 -2.5 K15720 N4BP2 NEDD4-binding protein 2 compare
mRNA_8205 16573 -1.2 -1.5 K11339 MORF4L1, MRG15, EAF3 mortality factor 4-like protein 1 compare
mRNA_8305 16673 -1.2 -2.4 Hypothetical Protein compare
mRNA_1309 9677 -1.1 -2.8 BLAST expressed protein [Cryptococcus neoformans var. neofo... compare
mRNA_562 8930 -1.1 -0.3 HMMPfam-HPC2 and ubinuclein domain-PF08729 compare
mRNA_8368 16736 -1.1 -1.4 K07119 K07119 uncharacterized protein compare
mRNA_996 9364 -1.1 -2.0 K19791 FET3_5 iron transport multicopper oxidase compare
mRNA_6179 14547 -1.1 -2.3 KOG2101 Intermediate filament-like protein, sorting nexins, and related proteins containing PX (PhoX) domain(s) compare
mRNA_914 9282 -1.1 -0.6 K10903 HUS1 HUS1 checkpoint protein compare
mRNA_2923 11291 -1.1 -3.1 Hypothetical Protein compare
mRNA_934 9302 -1.1 -3.1 K18726 FAF2, UBXD8 FAS-associated factor 2 compare
mRNA_514 8882 -1.1 -0.9 KOG0417 Ubiquitin-protein ligase compare
mRNA_8480 16848 -1.1 -1.9 KOG2174 Leptin receptor gene-related protein compare
mRNA_5885 14253 -1.1 -2.5 KOG1424 Predicted GTP-binding protein MMR1 compare
mRNA_856 9224 -1.1 -2.1 KOG0828 Predicted E3 ubiquitin ligase compare
mRNA_4041 12409 -1.1 -0.6 HMMPfam-Sds3-like-PF08598 compare
mRNA_833 9201 -1.1 -3.6 HMMPfam-Homeobox domain-PF00046,ProSiteProfiles-'Homeobox' domain profile.-PS50071,SMART-Homeodomain-SM00389,SUPERFAMILY--SSF46689 compare
mRNA_2072 10440 -1.1 -0.9 KOG2908 26S proteasome regulatory complex, subunit RPN9/PSMD13 compare
mRNA_3889 12257 -1.1 -2.7 K00587 ICMT, STE14 protein-S-isoprenylcysteine O-methyltransferase compare
mRNA_6938 15306 -1.1 -1.7 SUPERFAMILY--SSF56801 compare
mRNA_1965 10333 -1.0 -1.8 K11422 SETD1, SET1 histone-lysine N-methyltransferase SETD1 compare
mRNA_2407 10775 -1.0 -1.6 K10880 XRCC3 DNA-repair protein XRCC3 compare
mRNA_1569 9937 -1.0 -0.9 KOG3114 Uncharacterized conserved protein compare
mRNA_576 8944 -1.0 -1.5 K20182 VPS33 vacuolar protein sorting-associated protein 33 compare
mRNA_2740 11108 -1.0 -2.9 HMMPfam-SUR7/PalI family-PF06687 compare
mRNA_6448 14816 -1.0 -1.7 HMMPfam-F-box-like-PF12937 compare
mRNA_3328 11696 -1.0 -1.1 BLAST YALIA101S10e03422g1_1 [Yarrowia lipolytica] compare
mRNA_7113 15481 -1.0 -1.4 Hypothetical Protein compare
mRNA_6743 15111 -1.0 -1.4 K06671 STAG1_2, SCC3, IRR1 cohesin complex subunit SA-1/2 compare
mRNA_5891 14259 -1.0 -1.7 K11788 ADE5 phosphoribosylamine--glycine ligase / phosphoribosylformylglycinamidine cyclo-ligase compare
mRNA_8316 16684 -1.0 -0.6 KOG2923 Uncharacterized conserved protein compare
mRNA_635 9003 -1.0 -2.0 KOG1470 Phosphatidylinositol transfer protein PDR16 and related proteins compare
mRNA_4300 12668 -1.0 -1.4 K08257 E3.2.1.101 mannan endo-1,6-alpha-mannosidase compare
mRNA_2433 10801 -1.0 -1.3 K10866 RAD50 DNA repair protein RAD50 compare
mRNA_4912 13280 -1.0 -1.9 KOG3309 Ferredoxin compare
mRNA_7025 15393 -1.0 -2.3 K13122 FRG1 protein FRG1 compare
mRNA_5738 14106 -1.0 -1.5 SUPERFAMILY--SSF54928 compare
mRNA_4917 13285 -1.0 -1.4 KOG2920 Predicted methyltransferase compare
mRNA_3956 12324 -1.0 -1.9 KOG1843 Uncharacterized conserved protein compare
mRNA_7017 15385 -0.9 -1.0 K03574 mutT, NUDT15, MTH2 8-oxo-dGTP diphosphatase compare
mRNA_1615 9983 -0.9 -1.0 K03283 HSPA1_8 heat shock 70kDa protein 1/8 compare
mRNA_3944 12312 -0.9 -2.6 BLAST trna guanine-n1-methyltransferase [Ceraceosorus bomba... compare
mRNA_6534 14902 -0.9 -0.6 HMMPfam-Opy2 protein-PF09463 compare
mRNA_5543 13911 -0.9 -0.5 K15190 MEPCE, BCDIN3 7SK snRNA methylphosphate capping enzyme compare
mRNA_7737 16105 -0.9 -1.2 HMMPfam-Antibiotic biosynthesis monooxygenase-PF03992,SUPERFAMILY--SSF54909 compare
mRNA_8351 16719 -0.9 -1.0 K14303 NUP160, NUP120 nuclear pore complex protein Nup160 compare
mRNA_469 8837 -0.9 -3.1 KOG1012 Ca2+-dependent lipid-binding protein CLB1/vesicle protein vp115/Granuphilin A, contains C2 domain compare
mRNA_6057 14425 -0.9 -2.6 Hypothetical Protein compare
mRNA_8413 16781 -0.9 -1.7 KOG4484 Uncharacterized conserved protein compare
mRNA_1056 9424 -0.9 -2.3 Hypothetical Protein compare
mRNA_7040 15408 -0.9 -3.4 Hypothetical Protein compare
mRNA_1151 9519 -0.9 -0.8 Hypothetical Protein compare
mRNA_640 9008 -0.9 -1.5 HMMPfam-UV radiation resistance protein and autophagy-related subunit 14-PF10186 compare
mRNA_7169 15537 -0.9 -0.5 K13137 STRAP, UNRIP serine-threonine kinase receptor-associated protein compare
mRNA_569 8937 -0.9 -2.4 K07059 K07059 uncharacterized protein compare
mRNA_1055 9423 -0.9 -1.1 KOG0590 Checkpoint kinase and related serine/threonine protein kinases compare
mRNA_3515 11883 -0.9 -1.9 K01277 DPP3 dipeptidyl-peptidase III compare
mRNA_3418 11786 -0.9 -0.1 KOG1502 Flavonol reductase/cinnamoyl-CoA reductase compare
mRNA_2820 11188 -0.9 -0.4 HMMPfam-2-oxoacid dehydrogenases acyltransferase (catalytic domain)-PF00198,HMMPfam-Biotin-requiring enzyme-PF00364,HMMPfam-e3 binding domain-PF02817,SUPERFAMILY--SSF47005,SUPERFAMILY--SSF51230,SUPERFAMILY--SSF52777 compare
mRNA_5929 14297 -0.9 -1.8 Hypothetical Protein compare
mRNA_1032 9400 -0.9 -1.6 Hypothetical Protein compare
mRNA_3511 11879 -0.9 -0.5 K10875 RAD54L, RAD54 DNA repair and recombination protein RAD54 and RAD54-like protein compare
mRNA_3876 12244 -0.9 -2.0 KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) compare
mRNA_7307 15675 -0.9 -1.9 Hypothetical Protein compare
mRNA_1527 9895 -0.9 -0.7 KOG3272 Predicted coiled-coil protein compare
mRNA_3223 11591 -0.9 -2.1 Hypothetical Protein compare
mRNA_4590 12958 -0.9 -1.9 Hypothetical Protein compare
mRNA_5832 14200 -0.9 -2.3 K02863 RP-L1, MRPL1, rplA large subunit ribosomal protein L1 compare
mRNA_4086 12454 -0.9 -1.6 Hypothetical Protein compare
mRNA_8119 16487 -0.9 -1.9 Hypothetical Protein compare
mRNA_4531 12899 -0.9 -2.8 K03671 trxA thioredoxin 1 compare
mRNA_2990 11358 -0.9 -2.6 SUPERFAMILY--SSF52047 compare
mRNA_6438 14806 -0.9 -2.7 K15456 KTI12 protein KTI12 compare
mRNA_3392 11760 -0.9 -2.1 HMMPfam-Caffeine-induced death protein 2-PF09774 compare
mRNA_6161 14529 -0.9 -2.1 Hypothetical Protein compare
mRNA_8173 16541 -0.9 -0.7 HMMPfam-Glutathione-dependent formaldehyde-activating enzyme-PF04828,SUPERFAMILY--SSF51316 compare
mRNA_5560 13928 -0.8 -1.1 BLAST PROTEIN D2013.6 [Ceraceosorus bombacis] compare
mRNA_6903 15271 -0.8 -2.2 Hypothetical Protein compare
mRNA_1976 10344 -0.8 -0.6 Hypothetical Protein compare
mRNA_7568 15936 -0.8 -0.3 K18753 ZFP36L butyrate response factor 1 compare
mRNA_3030 11398 -0.8 -2.2 Hypothetical Protein compare
mRNA_6836 15204 -0.8 -1.4 Interpro Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family compare
mRNA_2286 10654 -0.8 -1.6 Hypothetical Protein compare
mRNA_1571 9939 -0.8 -3.0 K03695 clpB ATP-dependent Clp protease ATP-binding subunit ClpB compare
mRNA_1947 10315 -0.8 -2.6 K14864 FTSJ1, TRM7 tRNA (cytidine32/guanosine34-2'-O)-methyltransferase compare
mRNA_435 8803 -0.8 -2.6 K14845 RAI1, DOM3Z RAT1-interacting protein compare
mRNA_2548 10916 -0.8 -2.2 KOG1943 Beta-tubulin folding cofactor D compare
mRNA_1788 10156 -0.8 -3.5 K16368 DGK1 diacylglycerol kinase (CTP) compare
mRNA_7916 16284 -0.8 -3.1 K08683 HSD17B10 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
mRNA_7554 15922 -0.8 -0.4 K07359 CAMKK calcium/calmodulin-dependent protein kinase kinase compare
mRNA_6861 15229 -0.8 -3.1 HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473 compare
mRNA_1401 9769 -0.8 -1.7 Hypothetical Protein compare
mRNA_7046 15414 -0.8 0.2 K01341 KEX2 kexin compare
mRNA_4556 12924 -0.8 -1.4 KOG1294 Apurinic/apyrimidinic endonuclease and related enzymes compare
mRNA_5234 13602 -0.8 -1.9 KOG0725 Reductases with broad range of substrate specificities compare
mRNA_2148 10516 -0.8 -2.7 KOG2490 Predicted membrane protein compare
mRNA_3535 11903 -0.8 -1.4 HMMPfam-Protein of unknown function (DUF2419)-PF10343 compare
mRNA_7315 15683 -0.8 -1.4 K05527 bolA BolA protein compare
mRNA_6415 14783 -0.8 -1.1 Hypothetical Protein compare
mRNA_6775 15143 -0.8 -0.5 K14784 CMS1 protein CMS1 compare
mRNA_8377 16745 -0.8 -2.3 HMMPfam-Fungal specific transcription factor domain-PF04082 compare
mRNA_5201 13569 -0.8 -1.5 K02304 MET8 precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase compare
mRNA_1988 10356 -0.8 -2.7 KOG1674 Cyclin compare
mRNA_3483 11851 -0.8 -2.2 KOG0683 Glutamine synthetase compare
mRNA_3428 11796 -0.8 -2.5 Hypothetical Protein compare
mRNA_874 9242 -0.8 -1.6 BLAST Pc13g07060 [Penicillium rubens Wisconsin 54-1255] compare
mRNA_3580 11948 -0.8 -0.4 KOG0715 Molecular chaperone (DnaJ superfamily) compare
mRNA_1684 10052 -0.8 -1.1 Hypothetical Protein compare
mRNA_6005 14373 -0.8 -1.6 Hypothetical Protein compare
mRNA_8216 16584 -0.8 -0.3 K14376 PAP poly(A) polymerase compare
mRNA_4324 12692 -0.8 -2.5 K18754 LIN28 protein lin-28 compare
mRNA_2017 10385 -0.8 -3.4 K12600 SKI3, TTC37 superkiller protein 3 compare
mRNA_6768 15136 -0.8 -1.4 HMMPfam-DNA repair protein endonuclease SAE2/CtIP C-terminus-PF08573 compare
mRNA_539 8907 -0.8 -2.4 HMMPfam-Zinc finger, C2H2 type-PF00096,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157 compare
mRNA_3848 12216 -0.8 -2.0 KOG1817 Ribonuclease compare
mRNA_6609 14977 -0.8 -1.3 KOG1232 Proteins containing the FAD binding domain compare
mRNA_1888 10256 -0.8 -1.1 HMMPfam-Protein of unknown function (DUF2423)-PF10338 compare
mRNA_6141 14509 -0.8 -1.3 HMMPfam-GGL domain-PF00631,SUPERFAMILY--SSF48670 compare
mRNA_4721 13089 -0.8 -0.3 K10643 CNOT4, NOT4, MOT2 CCR4-NOT transcription complex subunit 4 compare
mRNA_4108 12476 -0.8 -2.0 HMMPfam-Aminotransferase class IV-PF01063,SUPERFAMILY--SSF56752 compare
mRNA_1876 10244 -0.8 -1.1 Hypothetical Protein compare
mRNA_7450 15818 -0.8 -0.9 BLAST proteophosphoglycan protein, putative [Rhizoctonia so... compare
mRNA_4617 12985 -0.8 -2.1 Hypothetical Protein compare
mRNA_48 8416 -0.8 -0.9 HMMPfam-Serine hydrolase (FSH1)-PF03959,SUPERFAMILY--SSF53474 compare
mRNA_5821 14189 -0.8 -2.3 SUPERFAMILY--SSF52047 compare
mRNA_5477 13845 -0.8 -0.9 K20179 VPS11, PEP5 vacuolar protein sorting-associated protein 11 compare
mRNA_8279 16647 -0.8 -1.3 BLAST Type-1 angiotensin II receptor-associated protein [Ch... compare
mRNA_3836 12204 -0.8 -3.1 Hypothetical Protein compare
mRNA_4642 13010 -0.8 -1.7 Hypothetical Protein compare
mRNA_1587 9955 -0.8 -2.5 HMMPfam-Protein of unknown function (DUF3759)-PF12585 compare
mRNA_7191 15559 -0.8 -1.1 Hypothetical Protein compare


Specific Phenotypes

None in this experiment

For Rhodosporidium toruloides IFO0880 in growth on ypd experiments

For growth on ypd YPD across organisms

Metabolic Maps

Color code by fitness: see overview map or list of maps.