Experiment setAYPD_YPD for Rhodosporidium toruloides IFO0880

Compare to:

YPD

200 most detrimental genes:

  gene name fitness t score description  
mRNA_1932 10300 3.7 2.0 BLAST family 69 glycosyltransferase [Melampsora larici-... compare
mRNA_3832 12200 3.3 2.0 Hypothetical Protein compare
mRNA_6771 15139 3.1 1.0 Hypothetical Protein compare
mRNA_3737 12105 2.9 1.9 BLAST TPR-2 domain protein [Rhizoctonia solani AG-3 Rhs1AP] compare
mRNA_3955 12323 2.7 0.9 K02355 fusA, GFM, EFG elongation factor G compare
mRNA_4290 12658 2.7 1.6 Hypothetical Protein compare
mRNA_7085 15453 2.6 2.3 HMMPfam-TRF2-interacting telomeric protein/Rap1 - C terminal domain-PF11626,SUPERFAMILY--SSF46689 compare
mRNA_988 9356 2.6 1.4 BLAST glycerol-3-phosphate O-acyltransferase [Sanghuangporu... compare
mRNA_8371 16739 2.6 0.9 HMMPfam-GPR1/FUN34/yaaH family-PF01184 compare
mRNA_1215 9583 2.6 1.6 Hypothetical Protein compare
mRNA_2701 11069 2.5 1.5 HMMPfam-Glycosyltransferase sugar-binding region containing DXD motif-PF04488,SUPERFAMILY--SSF53448 compare
mRNA_5222 13590 2.4 2.2 Hypothetical Protein compare
mRNA_5917 14285 2.4 0.9 Hypothetical Protein compare
mRNA_2330 10698 2.4 1.5 KOG0583 Serine/threonine protein kinase compare
mRNA_3559 11927 2.3 1.2 K18622 ADD adducin compare
mRNA_3015 11383 2.3 0.6 KOG3252 Uncharacterized conserved protein compare
mRNA_4237 12605 2.2 1.4 K15100 SLC25A1, CTP solute carrier family 25 (mitochondrial citrate transporter), member 1 compare
mRNA_6533 14901 2.2 1.4 Hypothetical Protein compare
mRNA_4618 12986 2.1 1.1 Hypothetical Protein compare
mRNA_5737 14105 2.1 1.6 HMMPfam-Arsenite-resistance protein 2-PF04959,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157 compare
mRNA_3631 11999 2.1 0.6 Hypothetical Protein compare
mRNA_1139 9507 2.0 3.0 KOG0948 Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily compare
mRNA_7858 16226 2.0 1.0 K11673 ACTR8, ARP8, INO80N actin-related protein 8 compare
mRNA_858 9226 2.0 0.6 K10599 PRPF19, PRP19 pre-mRNA-processing factor 19 compare
mRNA_441 8809 1.9 1.2 K13989 DERL2_3 Derlin-2/3 compare
mRNA_3756 12124 1.9 1.9 HMMPfam-Protein of unknown function (DUF2665)-PF11654 compare
mRNA_2822 11190 1.9 0.6 SUPERFAMILY--SSF52047 compare
mRNA_5642 14010 1.9 1.0 Interpro Mitochondrial inner-membrane-bound regulator compare
mRNA_3815 12183 1.8 0.6 K06631 PLK1 polo-like kinase 1 compare
mRNA_6020 14388 1.8 0.9 SUPERFAMILY--SSF52047 compare
mRNA_2462 10830 1.8 1.0 SUPERFAMILY--SSF52047 compare
mRNA_8404 16772 1.8 2.5 Hypothetical Protein compare
mRNA_3232 11600 1.8 1.0 ProSiteProfiles-BRCT domain profile.-PS50172 compare
mRNA_8219 16587 1.8 3.0 K15202 GTF3C5, TFC1 general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) compare
mRNA_4013 12381 1.8 1.2 HMMPfam-DJ-1/PfpI family-PF01965,HMMPfam-N-terminal domain of DJ-1_PfpI family-PF13587,SUPERFAMILY--SSF52317 compare
mRNA_2874 11242 1.7 2.0 K00555 TRMT1, trm1 tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase compare
mRNA_3600 11968 1.7 1.0 HMMPfam-PWWP domain-PF00855,ProSiteProfiles-PWWP domain profile.-PS50812,SMART-domain with conserved PWWP motif-SM00293,SUPERFAMILY--SSF63748 compare
mRNA_1213 9581 1.7 1.5 KOG1205 Predicted dehydrogenase compare
mRNA_6738 15106 1.7 1.2 Hypothetical Protein compare
mRNA_3736 12104 1.7 0.7 K00573 E2.1.1.77, pcm protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
mRNA_7218 15586 1.7 0.8 K20405 NPRL2 nitrogen permease regulator 2-like protein compare
mRNA_5990 14358 1.7 1.9 Hypothetical Protein compare
mRNA_2352 10720 1.7 1.1 K02903 RP-L28e, RPL28 large subunit ribosomal protein L28e compare
mRNA_5436 13804 1.7 0.9 Hypothetical Protein compare
mRNA_5863 14231 1.7 1.8 K09281 K09281 copper-fist transcription factor compare
mRNA_7891 16259 1.6 2.1 Hypothetical Protein compare
mRNA_5204 13572 1.6 0.5 Hypothetical Protein compare
mRNA_5619 13987 1.6 0.6 K09885 AQPF aquaporin rerated protein, other eukaryote compare
mRNA_1804 10172 1.6 0.6 Hypothetical Protein compare
mRNA_3657 12025 1.6 1.1 Hypothetical Protein compare
mRNA_523 8891 1.6 2.2 K11644 SIN3A paired amphipathic helix protein Sin3a compare
mRNA_7126 15494 1.6 1.9 K15122 SLC41A solute carrier family 41 compare
mRNA_125 8493 1.6 2.0 HMMPfam-Alpha/beta hydrolase family-PF12695,SUPERFAMILY--SSF53474 compare
mRNA_802 9170 1.6 -0.0 SUPERFAMILY--SSF52047 compare
mRNA_6905 15273 1.6 4.0 K14300 NUP133 nuclear pore complex protein Nup133 compare
mRNA_5334 13702 1.5 1.0 K14563 NOP1, FBL rRNA 2'-O-methyltransferase fibrillarin compare
mRNA_2647 11015 1.5 0.2 Hypothetical Protein compare
mRNA_4101 12469 1.5 0.5 Hypothetical Protein compare
mRNA_1921 10289 1.5 1.3 KOG4373 Predicted 3'-5' exonuclease compare
mRNA_5611 13979 1.5 0.2 HMMPfam-Protein of unknown function (DUF2433)-PF10360 compare
mRNA_449 8817 1.5 2.6 HMMPfam-ESSS subunit of NADH-ubiquinone oxidoreductase (complex I)-PF10183 compare
mRNA_8437 16805 1.5 0.6 K16948 CDC12 cell division control protein 12 compare
mRNA_5170 13538 1.5 0.7 Hypothetical Protein compare
mRNA_21 8389 1.5 2.7 SUPERFAMILY--SSF51045 compare
mRNA_6799 15167 1.5 0.5 K00033 PGD, gnd, gntZ 6-phosphogluconate dehydrogenase compare
mRNA_1627 9995 1.4 1.0 K18551 SDT1 pyrimidine and pyridine-specific 5'-nucleotidase compare
mRNA_5017 13385 1.4 1.6 K08963 mtnA methylthioribose-1-phosphate isomerase compare
mRNA_7921 16289 1.4 0.5 KOG3022 Predicted ATPase, nucleotide-binding compare
mRNA_3462 11830 1.4 0.6 K17978 NUM1 nuclear migration protein NUM1 compare
mRNA_7419 15787 1.4 0.7 Hypothetical Protein compare
mRNA_7881 16249 1.4 1.4 Hypothetical Protein compare
mRNA_7999 16367 1.4 0.4 K10994 RAD9A cell cycle checkpoint control protein RAD9A compare
mRNA_8193 16561 1.4 1.1 Hypothetical Protein compare
mRNA_6364 14732 1.4 1.6 BLAST putative protein [Melanopsichium pennsylvanicum 4] compare
mRNA_7396 15764 1.4 0.8 K18584 ACTR3, ARP3 actin-related protein 3 compare
mRNA_4707 13075 1.3 1.8 KOG4431 Uncharacterized protein, induced by hypoxia compare
mRNA_528 8896 1.3 1.3 BLAST hydroxymethylglutaryl-mitochondrial isoform 1 [Lichth... compare
mRNA_1297 9665 1.3 0.7 K17292 TBCA tubulin-specific chaperone A compare
mRNA_8204 16572 1.3 0.5 KOG3289 Uncharacterized conserved protein encoded by sequence overlapping the COX4 gene compare
mRNA_4628 12996 1.3 2.2 KOG0253 Synaptic vesicle transporter SV2 (major facilitator superfamily) compare
mRNA_179 8547 1.3 2.8 KOG2886 Uncharacterized conserved protein compare
mRNA_118 8486 1.3 0.6 HMMPfam-Protein of unknown function (DUF1674)-PF07896 compare
mRNA_1654 10022 1.3 0.8 BLAST expressed protein [Cryptococcus neoformans var. neofo... compare
mRNA_1118 9486 1.3 2.2 HMMPfam-RTA1 like protein-PF04479 compare
mRNA_3121 11489 1.3 0.9 KOG1039 Predicted E3 ubiquitin ligase compare
mRNA_2515 10883 1.3 1.2 KOG0035 Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) compare
mRNA_7336 15704 1.3 2.4 Hypothetical Protein compare
mRNA_4528 12896 1.3 2.5 Hypothetical Protein compare
mRNA_5723 14091 1.3 1.9 K15447 TRM44, METTL19 tRNASer (uridine44-2'-O)-methyltransferase compare
mRNA_3812 12180 1.2 3.6 HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232 compare
mRNA_4807 13175 1.2 2.9 K03119 tauD taurine dioxygenase compare
mRNA_5826 14194 1.2 1.8 SUPERFAMILY--SSF52047 compare
mRNA_7146 15514 1.2 2.4 Hypothetical Protein compare
mRNA_1922 10290 1.2 1.0 Hypothetical Protein compare
mRNA_4186 12554 1.2 1.6 KOG2806 Chitinase compare
mRNA_7662 16030 1.2 2.3 K13519 LPT1, ALE1 lysophospholipid acyltransferase compare
mRNA_4812 13180 1.2 0.9 K15255 PIF1 ATP-dependent DNA helicase PIF1 compare
mRNA_7974 16342 1.2 1.7 Hypothetical Protein compare
mRNA_4703 13071 1.2 1.2 Hypothetical Protein compare
mRNA_6402 14770 1.2 0.7 Hypothetical Protein compare
mRNA_1027 9395 1.2 0.9 Hypothetical Protein compare
mRNA_2227 10595 1.2 0.8 K12392 AP1B1 AP-1 complex subunit beta-1 compare
mRNA_5935 14303 1.2 1.5 HMMPfam-Homeobox KN domain-PF05920,ProSiteProfiles-'Homeobox' domain profile.-PS50071,SUPERFAMILY--SSF46689 compare
mRNA_1574 9942 1.1 1.0 K06867 K06867 uncharacterized protein compare
mRNA_8363 16731 1.1 3.0 KOG1693 emp24/gp25L/p24 family of membrane trafficking proteins compare
mRNA_4254 12622 1.1 1.9 HMMPfam-Lactonase, 7-bladed beta-propeller-PF10282,SUPERFAMILY--SSF75011 compare
mRNA_921 9289 1.1 2.2 KOG1485 Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) compare
mRNA_1261 9629 1.1 1.0 K04712 DEGS sphingolipid Delta-4 desaturase compare
mRNA_3405 11773 1.1 -0.6 K17922 SNX8, MVP1 sorting nexin-8 compare
mRNA_7280 15648 1.1 2.1 Hypothetical Protein compare
mRNA_8181 16549 1.1 1.4 KOG1752 Glutaredoxin and related proteins compare
mRNA_273 8641 1.1 1.1 K15174 PAF1 RNA polymerase II-associated factor 1 compare
mRNA_5173 13541 1.1 0.9 KOG1189 Global transcriptional regulator, cell division control protein compare
mRNA_1483 9851 1.1 0.3 BLAST Protein priB [Grifola frondosa] compare
mRNA_2677 11045 1.1 1.2 ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157 compare
mRNA_7096 15464 1.1 1.9 K16729 CHORDC1, CHP1 cysteine and histidine-rich domain-containing protein 1 compare
mRNA_5174 13542 1.1 2.2 Hypothetical Protein compare
mRNA_4039 12407 1.1 3.5 K00825 AADAT, KAT2 kynurenine/2-aminoadipate aminotransferase compare
mRNA_7378 15746 1.1 1.8 KOG1180 Acyl-CoA synthetase compare
mRNA_2748 11116 1.1 1.1 KOG3772 M-phase inducer phosphatase compare
mRNA_7106 15474 1.1 1.7 K11313 SUPT3H, SPT3 transcription initiation protein SPT3 compare
mRNA_2097 10465 1.1 0.8 K03217 yidC, spoIIIJ, OXA1, ccfA YidC/Oxa1 family membrane protein insertase compare
mRNA_1993 10361 1.1 0.4 Hypothetical Protein compare
mRNA_6429 14797 1.1 0.5 BLAST putative protein [Melanopsichium pennsylvanicum 4] compare
mRNA_3192 11560 1.1 2.3 HMMPfam-Hypothetical protein FLILHELTA-PF10306 compare
mRNA_1538 9906 1.1 1.1 K20307 TRAPPC10, TRS130 trafficking protein particle complex subunit 10 compare
mRNA_5305 13673 1.1 0.7 K14859 SSF1_2 ribosome biogenesis protein SSF1/2 compare
mRNA_2545 10913 1.1 0.2 K05767 IQGAP2_3 Ras GTPase-activating-like protein IQGAP2/3 compare
mRNA_7417 15785 1.1 0.5 K03353 APC6, CDC16 anaphase-promoting complex subunit 6 compare
mRNA_3924 12292 1.1 -0.4 KOG1993 Nuclear transport receptor KAP120 (importin beta superfamily) compare
mRNA_6288 14656 1.1 1.8 KOG0876 Manganese superoxide dismutase compare
mRNA_4311 12679 1.1 2.4 HMMPfam-Glycosyl hydrolases family 16-PF00722,SUPERFAMILY--SSF49899 compare
mRNA_138 8506 1.1 3.1 KOG4473 Uncharacterized membrane protein compare
mRNA_6846 15214 1.1 0.6 K02603 ORC1 origin recognition complex subunit 1 compare
mRNA_7924 16292 1.1 1.1 Hypothetical Protein compare
mRNA_4805 13173 1.1 2.0 ProSiteProfiles-BTB domain profile.-PS50097 compare
mRNA_5280 13648 1.1 2.3 KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily compare
mRNA_5507 13875 1.1 0.4 KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase compare
mRNA_645 9013 1.1 0.8 KOG3104 Mod5 protein sorting/negative effector of RNA Pol III synthesis compare
mRNA_453 8821 1.1 2.5 SUPERFAMILY--SSF52047 compare
mRNA_6772 15140 1.1 1.1 KOG0202 Ca2+ transporting ATPase compare
mRNA_5432 13800 1.0 1.6 Hypothetical Protein compare
mRNA_109 8477 1.0 0.4 Hypothetical Protein compare
mRNA_2646 11014 1.0 1.3 HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52058 compare
mRNA_6354 14722 1.0 2.5 BLAST Mei2p [Pneumocystis carinii] compare
mRNA_1188 9556 1.0 0.7 Hypothetical Protein compare
mRNA_815 9183 1.0 0.7 K04555 UBE2G2, UBC7 ubiquitin-conjugating enzyme E2 G2 compare
mRNA_4966 13334 1.0 1.2 Hypothetical Protein compare
mRNA_6674 15042 1.0 2.6 HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232 compare
mRNA_7674 16042 1.0 0.3 SUPERFAMILY--SSF48371 compare
mRNA_4992 13360 1.0 2.5 Hypothetical Protein compare
mRNA_5889 14257 1.0 0.5 K02977 RP-S27Ae, RPS27A small subunit ribosomal protein S27Ae compare
mRNA_2549 10917 1.0 0.4 HMMPfam-Chromatin modification-related protein EAF7-PF07904 compare
mRNA_8317 16685 1.0 2.2 Hypothetical Protein compare
mRNA_6123 14491 1.0 1.2 BLAST DNA polymerase [Rhizoctonia solani] compare
mRNA_4723 13091 1.0 0.8 Hypothetical Protein compare
mRNA_1500 9868 1.0 1.1 K05770 TSPO, BZRP benzodiazapine receptor compare
mRNA_7627 15995 1.0 3.0 K01273 DPEP membrane dipeptidase compare
mRNA_7741 16109 1.0 2.3 Hypothetical Protein compare
mRNA_7671 16039 1.0 0.8 SUPERFAMILY--SSF56112 compare
mRNA_7266 15634 1.0 1.1 Hypothetical Protein compare
mRNA_3788 12156 1.0 3.2 Hypothetical Protein compare
mRNA_3626 11994 1.0 1.8 BLAST SH3 domain-containing protein [Rhizoctonia solani AG-... compare
mRNA_8100 16468 1.0 1.4 BLAST DigA protein [Rhizoctonia solani AG-3 Rhs1AP] compare
mRNA_6615 14983 1.0 3.0 Hypothetical Protein compare
mRNA_3285 11653 1.0 2.7 KOG2069 Golgi transport complex subunit compare
mRNA_326 8694 1.0 1.0 K17983 SHE9 sensitive to high expression protein 9, mitochondrial compare
mRNA_6144 14512 1.0 2.4 KOG1414 Transcriptional activator FOSB/c-Fos and related bZIP transcription factors compare
mRNA_6873 15241 1.0 3.0 K01409 KAE1, tsaD, QRI7 N6-L-threonylcarbamoyladenine synthase compare
mRNA_5999 14367 1.0 1.1 KOG1064 RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily compare
mRNA_375 8743 1.0 1.6 HMMPfam-Cytidine and deoxycytidylate deaminase zinc-binding region-PF00383,ProSitePatterns-Cytidine and deoxycytidylate deaminases zinc-binding region signature.-PS00903,SUPERFAMILY--SSF53927 compare
mRNA_131 8499 1.0 0.4 K11092 SNRPA1 U2 small nuclear ribonucleoprotein A' compare
mRNA_4009 12377 1.0 0.8 K10639 CCNB1IP1, HEI10 E3 ubiquitin-protein ligase CCNP1IP1 compare
mRNA_4985 13353 1.0 0.5 BLAST vps9 domain protein [Zymoseptoria brevis] compare
mRNA_6278 14646 1.0 -0.0 K17080 PHB1 prohibitin 1 compare
mRNA_755 9123 0.9 1.6 HMMPfam-Ribosomal protein L9, N-terminal domain-PF01281,SUPERFAMILY--SSF55658 compare
mRNA_4652 13020 0.9 2.4 Hypothetical Protein compare
mRNA_3203 11571 0.9 0.3 Hypothetical Protein compare
mRNA_7912 16280 0.9 0.4 K11434 PRMT1 type I protein arginine methyltransferase compare
mRNA_236 8604 0.9 2.8 HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF52047 compare
mRNA_3629 11997 0.9 1.3 Hypothetical Protein compare
mRNA_1668 10036 0.9 1.4 HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729 compare
mRNA_6728 15096 0.9 1.4 K14309 NUP93, NIC96 nuclear pore complex protein Nup93 compare
mRNA_7995 16363 0.9 0.6 Hypothetical Protein compare
mRNA_7034 15402 0.9 1.8 HMMPfam-UBA/TS-N domain-PF00627,HMMPfam-Uncharacterized conserved protein (DUF2196)-PF09962,ProSiteProfiles-Ubiquitin-associated domain (UBA) profile.-PS50030,SUPERFAMILY--SSF46934 compare
mRNA_4361 12729 0.9 2.4 K10576 UBE2H, UBC8 ubiquitin-conjugating enzyme E2 H compare
mRNA_2323 10691 0.9 1.5 Hypothetical Protein compare
mRNA_2531 10899 0.9 2.8 KOG2816 Predicted transporter ADD1 (major facilitator superfamily) compare
mRNA_7852 16220 0.9 0.8 Hypothetical Protein compare
mRNA_4621 12989 0.9 2.2 KOG0141 Isovaleryl-CoA dehydrogenase compare
mRNA_1511 9879 0.9 0.1 KOG2136 Transcriptional regulators binding to the GC-rich sequences compare
mRNA_6652 15020 0.9 0.6 K02975 RP-S25e, RPS25 small subunit ribosomal protein S25e compare
mRNA_6182 14550 0.9 2.8 K06665 SSN6 glucose repression mediator protein compare
mRNA_1600 9968 0.9 1.4 K12178 COPS4, CSN4 COP9 signalosome complex subunit 4 compare
mRNA_4734 13102 0.9 3.9 Hypothetical Protein compare
mRNA_2897 11265 0.9 1.4 K12613 DCP2 mRNA-decapping enzyme subunit 2 compare
mRNA_6590 14958 0.9 -0.0 K03009 RPB12, POLR2K DNA-directed RNA polymerases I, II, and III subunit RPABC4 compare
mRNA_2123 10491 0.9 1.8 HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685 compare
mRNA_5732 14100 0.9 1.7 HMMPfam-bZIP transcription factor-PF00170,HMMPfam-Minimal binding motif of Hap4 for binding to Hap2/3/5-PF10297,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,SUPERFAMILY--SSF57959 compare
mRNA_6375 14743 0.9 3.2 K01178 E3.2.1.3 glucoamylase compare


Specific Phenotypes

None in this experiment

For Rhodosporidium toruloides IFO0880 in growth on ypd experiments

For growth on ypd YPD across organisms

Metabolic Maps

Color code by fitness: see overview map or list of maps.