Experiment setARA_YNB_Gluc for Rhodosporidium toruloides IFO0880

Compare to:

YNB Glucose

200 most detrimental genes:

  gene name fitness t score description  
mRNA_2796 11164 2.8 1.7 K08286 E2.7.11.- protein-serine/threonine kinase compare
mRNA_699 9067 2.4 6.9 K20289 COG2 conserved oligomeric Golgi complex subunit 2 compare
mRNA_3307 11675 2.3 16.1 K06268 PPP3R, CNB serine/threonine-protein phosphatase 2B regulatory subunit compare
mRNA_1755 10123 2.3 13.8 K00326 E1.6.2.2 cytochrome-b5 reductase compare
mRNA_4878 13246 2.2 14.7 K04348 PPP3C, CNA serine/threonine-protein phosphatase 2B catalytic subunit compare
mRNA_3729 12097 2.1 5.5 K15280 SLC35C2 solute carrier family 35, member C2 compare
mRNA_6553 14921 2.0 7.9 SUPERFAMILY--SSF52266 compare
mRNA_4595 12963 1.9 1.3 KOG2186 Cell growth-regulating nucleolar protein compare
mRNA_1677 10045 1.9 13.1 K15620 GOLPH3, GPP34 golgi phosphoprotein 3 compare
mRNA_3232 11600 1.8 1.3 ProSiteProfiles-BRCT domain profile.-PS50172 compare
mRNA_6463 14831 1.8 1.9 K10427 DCTN5 dynactin 5 compare
mRNA_3639 12007 1.7 0.8 K11204 GCLC glutamate--cysteine ligase catalytic subunit compare
mRNA_5363 13731 1.7 1.1 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_6539 14907 1.6 7.9 K19800 SCH9 serine/threonine protein kinase SCH9 compare
mRNA_5651 14019 1.6 3.1 K13728 MAD2L2 mitotic spindle assembly checkpoint protein MAD2B compare
mRNA_2270 10638 1.6 7.6 K19833 CLA4 serine/threonine-protein kinase CLA4 compare
mRNA_5720 14088 1.5 8.0 K04392 RAC1 Ras-related C3 botulinum toxin substrate 1 compare
mRNA_5688 14056 1.5 2.0 K12199 VTA1, LIP5 vacuolar protein sorting-associated protein VTA1 compare
mRNA_2358 10726 1.5 0.6 Hypothetical Protein compare
mRNA_6791 15159 1.4 1.9 K00888 PI4KA phosphatidylinositol 4-kinase A compare
mRNA_1888 10256 1.4 2.5 HMMPfam-Protein of unknown function (DUF2423)-PF10338 compare
mRNA_1934 10302 1.4 7.7 HMMPfam-Cryptococcal mannosyltransferase 1-PF11735 compare
mRNA_4961 13329 1.4 0.7 Hypothetical Protein compare
mRNA_4874 13242 1.4 1.4 KOG2922 Uncharacterized conserved protein compare
mRNA_624 8992 1.4 3.0 K13886 CORO1B_1C_6 coronin-1B/1C/6 compare
mRNA_5370 13738 1.3 1.9 K18443 GBF1 golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 compare
mRNA_5126 13494 1.3 3.1 Hypothetical Protein compare
mRNA_2372 10740 1.3 3.4 Hypothetical Protein compare
mRNA_2378 10746 1.3 2.9 Hypothetical Protein compare
mRNA_1654 10022 1.3 0.6 BLAST expressed protein [Cryptococcus neoformans var. neofo... compare
mRNA_2876 11244 1.3 2.2 K18715 NUP159 nucleoporin NUP159 compare
mRNA_1401 9769 1.3 2.3 Hypothetical Protein compare
mRNA_3753 12121 1.3 8.2 K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase compare
mRNA_1314 9682 1.2 2.9 BLAST carboxymethylenebutenolidase [Rhizoctonia solani AG-1... compare
mRNA_5652 14020 1.2 1.9 KOG4443 Putative transcription factor HALR/MLL3, involved in embryonic development compare
mRNA_5048 13416 1.2 2.3 HMMPfam-Animal haem peroxidase-PF03098,ProSiteProfiles-Animal heme peroxidase superfamily profile.-PS50292,SUPERFAMILY--SSF48113 compare
mRNA_8363 16731 1.2 3.7 KOG1693 emp24/gp25L/p24 family of membrane trafficking proteins compare
mRNA_5234 13602 1.2 2.5 KOG0725 Reductases with broad range of substrate specificities compare
mRNA_4955 13323 1.2 1.3 K20306 TRAPPC9, TRS120 trafficking protein particle complex subunit 9 compare
mRNA_274 8642 1.2 1.6 BLAST Putative Pc16g06240 protein [Torrubiella hemipterigena] compare
mRNA_5421 13789 1.2 3.0 Interpro Domain of unknown function (DUF5102) 0 compare
mRNA_7515 15883 1.2 12.4 K07827 KRAS, KRAS2 GTPase KRas compare
mRNA_3439 11807 1.2 3.4 KOG1703 Adaptor protein Enigma and related PDZ-LIM proteins compare
mRNA_427 8795 1.2 1.1 Hypothetical Protein compare
mRNA_7551 15919 1.2 6.3 KOG1032 Uncharacterized conserved protein, contains GRAM domain compare
mRNA_7833 16201 1.2 6.7 HMMPfam-Cryptococcal mannosyltransferase 1-PF11735 compare
mRNA_6958 15326 1.2 4.1 K09238 ACE2 metallothionein expression activator compare
mRNA_4866 13234 1.2 0.9 KOG2881 Predicted membrane protein compare
mRNA_7441 15809 1.2 0.2 K08884 K08884 serine/threonine protein kinase, bacterial compare
mRNA_6474 14842 1.2 2.8 HMMPfam-Vitamin-D-receptor interacting Mediator subunit 4-PF10018 compare
mRNA_1393 9761 1.2 0.7 Hypothetical Protein compare
mRNA_6195 14563 1.2 2.3 SUPERFAMILY--SSF52047 compare
mRNA_7901 16269 1.2 1.5 KOG1605 TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) compare
mRNA_4968 13336 1.2 4.6 KOG4464 Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) compare
mRNA_2784 11152 1.1 8.4 K20241 WDR44, RAB11BP WD repeat-containing protein 44 compare
mRNA_1829 10197 1.1 2.6 K20238 E2.1.1.317 sphingolipid C9-methyltransferase compare
mRNA_1480 9848 1.1 1.0 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_2227 10595 1.1 1.0 K12392 AP1B1 AP-1 complex subunit beta-1 compare
mRNA_6883 15251 1.1 6.7 BLAST similar to An03g02750 [Aspergillus kawachii IFO 4308] compare
mRNA_65 8433 1.1 1.8 K12882 NCBP1, CBP80 nuclear cap-binding protein subunit 1 compare
mRNA_7737 16105 1.1 2.1 HMMPfam-Antibiotic biosynthesis monooxygenase-PF03992,SUPERFAMILY--SSF54909 compare
mRNA_8404 16772 1.1 2.3 Hypothetical Protein compare
mRNA_5999 14367 1.1 1.7 KOG1064 RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily compare
mRNA_7433 15801 1.1 0.8 K10356 MYO1 myosin I compare
mRNA_7071 15439 1.1 1.9 BLAST histone H3 h3.1 [Schizosaccharomyces japonicus yF... compare
mRNA_3302 11670 1.1 3.4 K07232 chaC cation transport protein ChaC compare
mRNA_1214 9582 1.1 1.3 Hypothetical Protein compare
mRNA_811 9179 1.1 3.8 Interpro Glycosyl-transferase for dystroglycan compare
mRNA_3987 12355 1.1 3.8 K08576 CAPN7 calpain-7 compare
mRNA_2764 11132 1.1 3.0 Hypothetical Protein compare
mRNA_1366 9734 1.1 4.0 K00661 maa maltose O-acetyltransferase compare
mRNA_5594 13962 1.1 2.4 K07943 ARL2 ADP-ribosylation factor-like protein 2 compare
mRNA_8230 16598 1.1 4.7 K09668 LARGE glycosyltransferase-like protein LARGE compare
mRNA_4280 12648 1.1 6.7 HMMPfam-Actin interacting protein 3-PF03915,SMART-Actin interacting protein 3-SM00806 compare
mRNA_5540 13908 1.1 6.8 Interpro GDP-fucose protein O-fucosyltransferase compare
mRNA_386 8754 1.1 2.7 Hypothetical Protein compare
mRNA_2616 10984 1.1 2.4 KOG4076 Regulator of ATP-sensitive K+ channels Alpha-endosulfine/ARPP-19 and related cAMP-regulated phosphoproteins compare
mRNA_84 8452 1.1 1.4 K01522 FHIT bis(5'-adenosyl)-triphosphatase compare
mRNA_2660 11028 1.1 2.6 Hypothetical Protein compare
mRNA_6801 15169 1.0 4.8 K15279 SLC35C1, FUCT1 solute carrier family 35 (GDP-fucose transporter), member C1 compare
mRNA_3942 12310 1.0 3.1 K20298 VPS52 vacuolar protein sorting-associated protein 52 compare
mRNA_2330 10698 1.0 2.2 KOG0583 Serine/threonine protein kinase compare
mRNA_1582 9950 1.0 1.1 K01381 PEP4 saccharopepsin compare
mRNA_8205 16573 1.0 1.6 K11339 MORF4L1, MRG15, EAF3 mortality factor 4-like protein 1 compare
mRNA_3135 11503 1.0 2.8 HMMPfam-Alpha/beta hydrolase family-PF12695,SUPERFAMILY--SSF53474 compare
mRNA_8332 16700 1.0 6.1 K10082 LMAN2, VIP36 lectin, mannose-binding 2 compare
mRNA_7666 16034 1.0 1.3 K20184 VPS41 vacuolar protein sorting-associated protein 41 compare
mRNA_8237 16605 1.0 5.9 K04345 PKA protein kinase A compare
mRNA_3516 11884 1.0 1.2 K01466 allB allantoinase compare
mRNA_3739 12107 1.0 2.2 HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,ProSiteProfiles-Expansin, family-45 endoglucanase-like domain profile.-PS50842,SUPERFAMILY--SSF50685 compare
mRNA_5256 13624 1.0 2.8 SUPERFAMILY--SSF53448 compare
mRNA_5386 13754 1.0 1.4 Hypothetical Protein compare
mRNA_6839 15207 1.0 7.3 K17257 ITFG1 integrin alpha FG-GAP repeat containing protein 1 compare
mRNA_4237 12605 1.0 0.8 K15100 SLC25A1, CTP solute carrier family 25 (mitochondrial citrate transporter), member 1 compare
mRNA_1614 9982 1.0 3.6 KOG2819 Uncharacterized conserved protein compare
mRNA_2438 10806 1.0 1.0 HMMPfam-Predicted coiled-coil protein (DUF2205)-PF10224 compare
mRNA_33 8401 1.0 5.0 HMMPfam-Myosin-binding striated muscle assembly central-PF11701,SUPERFAMILY--SSF48371 compare
mRNA_5020 13388 1.0 1.4 K20178 VPS8 vacuolar protein sorting-associated protein 8 compare
mRNA_2113 10481 1.0 1.3 KOG0015 Regulator of arginine metabolism and related MADS box-containing transcription factors compare
mRNA_7044 15412 1.0 5.0 KOG4299 PHD Zn-finger protein compare
mRNA_443 8811 1.0 2.5 KOG2742 Predicted oxidoreductase compare
mRNA_2189 10557 1.0 2.7 K11236 CDC24 cell division control protein 24 compare
mRNA_4290 12658 1.0 1.3 Hypothetical Protein compare
mRNA_263 8631 1.0 4.7 K01537 E3.6.3.8 Ca2+-transporting ATPase compare
mRNA_2729 11097 1.0 2.7 KOG1485 Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) compare
mRNA_2828 11196 1.0 2.5 Hypothetical Protein compare
mRNA_3649 12017 1.0 3.0 HMMPfam-Protein of unknown function, DUF604-PF04646 compare
mRNA_8011 16379 1.0 1.1 K09537 DNAJC17 DnaJ homolog subfamily C member 17 compare
mRNA_2003 10371 1.0 6.0 KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif compare
mRNA_5988 14356 0.9 6.2 K06111 EXOC4, SEC8 exocyst complex component 4 compare
mRNA_3285 11653 0.9 3.0 KOG2069 Golgi transport complex subunit compare
mRNA_2405 10773 0.9 11.4 KOG1910 Uncharacterized conserved protein compare
mRNA_4101 12469 0.9 1.5 Hypothetical Protein compare
mRNA_5548 13916 0.9 2.3 KOG4006 Anti-proliferation factor BTG1/TOB compare
mRNA_5102 13470 0.9 7.9 KOG0619 FOG Leucine rich repeat compare
mRNA_7874 16242 0.9 1.6 K02202 CDK7 cyclin-dependent kinase 7 compare
mRNA_4137 12505 0.9 6.6 BLAST putative protein [Melanopsichium pennsylvanicum 4] compare
mRNA_7842 16210 0.9 3.3 HMMPfam-Ankyrin repeats (3 copies)-PF12796,ProSiteProfiles-Ankyrin repeat profile.-PS50088,ProSiteProfiles-Ankyrin repeat region circular profile.-PS50297,SMART-ankyrin repeats-SM00248,SUPERFAMILY--SSF48403 compare
mRNA_4153 12521 0.9 3.6 K20347 TMED2, EMP24 p24 family protein beta-1 compare
mRNA_2879 11247 0.9 1.3 HMMPfam-Protein of unknown function (DUF3237)-PF11578 compare
mRNA_6562 14930 0.9 1.9 K20353 SEC16 COPII coat assembly protein SEC16 compare
mRNA_7191 15559 0.9 0.8 Hypothetical Protein compare
mRNA_7062 15430 0.9 1.5 HMMPfam-N-acetyltransferase-PF00797,SUPERFAMILY--SSF54001 compare
mRNA_5555 13923 0.9 1.9 K19984 EXOC5, SEC10 exocyst complex component 5 compare
mRNA_6506 14874 0.9 4.1 KOG2712 Transcriptional coactivator compare
mRNA_2244 10612 0.9 1.0 KOG4120 G/T mismatch-specific thymine DNA glycosylase compare
mRNA_7396 15764 0.9 1.1 K18584 ACTR3, ARP3 actin-related protein 3 compare
mRNA_645 9013 0.9 0.9 KOG3104 Mod5 protein sorting/negative effector of RNA Pol III synthesis compare
mRNA_5369 13737 0.9 0.5 K03627 MBF1 putative transcription factor compare
mRNA_2101 10469 0.9 4.0 K12041 SLC9A6_7, NHE6_7 solute carrier family 9 (sodium/hydrogen exchanger), member 6/7 compare
mRNA_5045 13413 0.9 2.7 K01111 E3.1.3.68 2-deoxyglucose-6-phosphatase compare
mRNA_2566 10934 0.9 2.8 KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) compare
mRNA_7536 15904 0.9 2.3 KOG2216 Conserved coiled/coiled coil protein compare
mRNA_7583 15951 0.9 1.8 HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713 compare
mRNA_4917 13285 0.9 1.2 KOG2920 Predicted methyltransferase compare
mRNA_1719 10087 0.9 2.5 Hypothetical Protein compare
mRNA_6794 15162 0.9 2.8 K10773 NTH endonuclease III compare
mRNA_4575 12943 0.9 3.3 HMMPfam-ICE2-PF08426 compare
mRNA_1290 9658 0.9 1.2 K03872 TCEB1 transcription elongation factor B, polypeptide 1 compare
mRNA_6712 15080 0.9 2.2 Hypothetical Protein compare
mRNA_7674 16042 0.9 1.1 SUPERFAMILY--SSF48371 compare
mRNA_1610 9978 0.9 2.4 HMMPfam-CrcB-like protein-PF02537 compare
mRNA_5935 14303 0.9 1.2 HMMPfam-Homeobox KN domain-PF05920,ProSiteProfiles-'Homeobox' domain profile.-PS50071,SUPERFAMILY--SSF46689 compare
mRNA_1282 9650 0.9 0.9 Hypothetical Protein compare
mRNA_1741 10109 0.9 3.0 HMMPfam-Calcipressin-PF04847 compare
mRNA_5144 13512 0.9 2.0 BLAST putative mit domain-containing protein [Erysiphe neca... compare
mRNA_2248 10616 0.9 2.8 K01338 lon ATP-dependent Lon protease compare
mRNA_7495 15863 0.9 2.7 K10089 M6PR cation-dependent mannose-6-phosphate receptor compare
mRNA_1846 10214 0.9 5.2 KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif compare
mRNA_4067 12435 0.9 1.8 KOG0324 Uncharacterized conserved protein compare
mRNA_6757 15125 0.9 0.8 K11838 USP7, UBP15 ubiquitin carboxyl-terminal hydrolase 7 compare
mRNA_1806 10174 0.9 1.6 BLAST related to C2H2 zinc finger protein [Ustilago hordei] compare
mRNA_7156 15524 0.9 3.2 K20102 YTHDF YTH domain-containing family protein compare
mRNA_4493 12861 0.9 1.5 SUPERFAMILY--SSF52047 compare
mRNA_3413 11781 0.8 2.1 K00622 nat arylamine N-acetyltransferase compare
mRNA_8188 16556 0.8 1.8 K05012 CLCN3_4_5 chloride channel 3/4/5 compare
mRNA_869 9237 0.8 4.8 K17605 PPP2R4, PTPA serine/threonine-protein phosphatase 2A activator compare
mRNA_8351 16719 0.8 0.8 K14303 NUP160, NUP120 nuclear pore complex protein Nup160 compare
mRNA_7588 15956 0.8 2.1 Hypothetical Protein compare
mRNA_2373 10741 0.8 3.9 K08286 E2.7.11.- protein-serine/threonine kinase compare
mRNA_4312 12680 0.8 6.0 K14802 DRS2, ATP8A phospholipid-transporting ATPase compare
mRNA_2319 10687 0.8 2.3 KOG3872 FOG FHA domain compare
mRNA_4289 12657 0.8 2.1 K15445 TRMT10A, TRM10, RG9MTD2 tRNA (guanine9-N1)-methyltransferase compare
mRNA_3426 11794 0.8 3.9 K08498 STX6 syntaxin 6 compare
mRNA_2251 10619 0.8 1.5 KOG3313 Molecular chaperone Prefoldin, subunit 3 compare
mRNA_7738 16106 0.8 3.3 HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097 compare
mRNA_3898 12266 0.8 2.8 HMMPfam-Acetyltransferase (GNAT) domain-PF13508,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729 compare
mRNA_4419 12787 0.8 2.5 K11121 SIR2 NAD-dependent histone deacetylase SIR2 compare
mRNA_3012 11380 0.8 5.1 K06269 PPP1C serine/threonine-protein phosphatase PP1 catalytic subunit compare
mRNA_4108 12476 0.8 2.3 HMMPfam-Aminotransferase class IV-PF01063,SUPERFAMILY--SSF56752 compare
mRNA_6799 15167 0.8 0.0 K00033 PGD, gnd, gntZ 6-phosphogluconate dehydrogenase compare
mRNA_2915 11283 0.8 2.0 Hypothetical Protein compare
mRNA_7855 16223 0.8 1.0 K15443 TRM82, WDR4 tRNA (guanine-N(7)-)-methyltransferase subunit TRM82 compare
mRNA_7346 15714 0.8 1.8 Hypothetical Protein compare
mRNA_1450 9818 0.8 1.2 K20826 RPAP1 RNA polymerase II-associated protein 1 compare
mRNA_1456 9824 0.8 0.7 Hypothetical Protein compare
mRNA_2936 11304 0.8 3.3 Hypothetical Protein compare
mRNA_3322 11690 0.8 2.1 HMMPfam-Ribosomal RNA-processing protein 7 (RRP7)-PF12923 compare
mRNA_5805 14173 0.8 1.9 HMMPfam-Ion transport protein-PF00520,SUPERFAMILY--SSF81324 compare
mRNA_2521 10889 0.8 0.5 BLAST beta-glucosidase 1 precursor [Aspergillus rambellii] compare
mRNA_6513 14881 0.8 5.2 HMMPfam-Glycosyl transferase family 90-PF05686,SMART-Putative lipopolysaccharide-modifying enzyme.-SM00672 compare
mRNA_2406 10774 0.8 3.5 KOG4111 Translocase of outer mitochondrial membrane complex, subunit TOM22 compare
mRNA_7641 16009 0.8 3.3 Hypothetical Protein compare
mRNA_5265 13633 0.8 3.5 K18749 LSM14, RAP55, SCD6 protein LSM14 compare
mRNA_953 9321 0.8 1.5 Hypothetical Protein compare
mRNA_7449 15817 0.8 1.9 BLAST GH19984 [Drosophila grimshawi] compare
mRNA_4693 13061 0.8 1.4 Hypothetical Protein compare
mRNA_3659 12027 0.8 2.4 Hypothetical Protein compare
mRNA_6368 14736 0.8 0.9 KOG2049 Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) compare
mRNA_1945 10313 0.8 3.0 Hypothetical Protein compare
mRNA_8440 16808 0.8 1.1 Hypothetical Protein compare
mRNA_1200 9568 0.8 2.7 KOG3132 m3G-cap-specific nuclear import receptor (Snurportin1) compare
mRNA_6447 14815 0.8 1.8 Hypothetical Protein compare
mRNA_5510 13878 0.8 1.8 ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850 compare
mRNA_2131 10499 0.8 1.7 K09580 PDIA1, P4HB protein disulfide-isomerase A1 compare
mRNA_7486 15854 0.8 2.2 K08287 E2.7.12.1 dual-specificity kinase compare
mRNA_2036 10404 0.8 2.5 HMMPfam-Alpha and gamma adaptin binding protein p34-PF10199 compare
mRNA_259 8627 0.8 2.6 HMMPfam-Domain of unknown function (DUF1771)-PF08590,ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103,ProSiteProfiles-Smr domain profile.-PS50828,SMART-zinc finger-SM00356 compare
mRNA_286 8654 0.8 2.9 SUPERFAMILY--SSF52047 compare
mRNA_5983 14351 0.8 1.2 Hypothetical Protein compare


Specific Phenotypes

None in this experiment

For Rhodosporidium toruloides IFO0880 in growth on ricinoleic acid experiments

For growth on ricinoleic acid YNB Glucose across organisms

Metabolic Maps

Color code by fitness: see overview map or list of maps.