Experiment setARA_RA for Rhodosporidium toruloides IFO0880
YNB Ricinoleic Acid
Quality Metrics:
| Time0 | 4/1/16 setA | which Time0s the sample was compared to |
| cor12 | 0.18 | rank correlation(fit1, fit2), where fit1 is fitness for the first half (10-50%) and fit2 is fitness for the second half (50-90%) of each gene |
| maxFit | 5.53 | The maximum fitness value |
| opcor | 0.03 | rank correlation(upstream gene, downstream gene) over pairs that are adjacent and likely to be in the same operon |
| adjcor | 0.03 | like opcor but for adjacent genes that are not on the same strand |
| gccor | -0.02 | linear correlation of gene fitness and gene GC content |
| mad12 | 0.59 | median absolute difference of fit1, fit2 |
| mad12c | 1.11 | median absolute difference of log count for 1st and 2nd half of genes in this sample |
| mad12c_t0 | 1.03 | like mad12c but for the Time0s |
| gMed | 157 | median reads per gene in this sample |
| gMedt0 | 153 | median reads per gene in the Time0 sample |
| gMean | 286 | mean reads per gene in this sample |
| nMapped | 15.567 M | #reads for this sample that corresponded to a known strain (in millions) |
| nPastEnd | 0.000 M | #reads that corresponded to a strain that has an insertion within the suicide vector instead of within the genome. |
| nGenic | 5.975 M | #reads that lie within central 10-90% of a gene |
| nUsed | 5.841 M | #reads used to estimate gene fitness (genic and enough coverage for strain and for gene) |
Specific Phenotypes
None in this experiment
For Rhodosporidium toruloides IFO0880 in growth on ricinoleic acid experiments
For growth on ricinoleic acid YNB Ricinoleic Acid across organisms
Metabolic Maps
Color code by fitness: see overview map or list of maps.