Experiment setARA_MRA for Rhodosporidium toruloides IFO0880

Compare to:

YNB Methylricinoleic Acid

200 most detrimental genes:

  gene name fitness t score description  
mRNA_2796 11164 4.1 2.3 K08286 E2.7.11.- protein-serine/threonine kinase compare
mRNA_699 9067 3.8 10.4 K20289 COG2 conserved oligomeric Golgi complex subunit 2 compare
mRNA_4878 13246 3.7 21.6 K04348 PPP3C, CNA serine/threonine-protein phosphatase 2B catalytic subunit compare
mRNA_3307 11675 3.6 23.4 K06268 PPP3R, CNB serine/threonine-protein phosphatase 2B regulatory subunit compare
mRNA_3729 12097 3.5 10.5 K15280 SLC35C2 solute carrier family 35, member C2 compare
mRNA_1755 10123 3.4 18.0 K00326 E1.6.2.2 cytochrome-b5 reductase compare
mRNA_6553 14921 3.4 13.8 SUPERFAMILY--SSF52266 compare
mRNA_2270 10638 3.2 13.4 K19833 CLA4 serine/threonine-protein kinase CLA4 compare
mRNA_8230 16598 3.1 11.1 K09668 LARGE glycosyltransferase-like protein LARGE compare
mRNA_1934 10302 3.0 14.4 HMMPfam-Cryptococcal mannosyltransferase 1-PF11735 compare
mRNA_5720 14088 2.8 15.1 K04392 RAC1 Ras-related C3 botulinum toxin substrate 1 compare
mRNA_4955 13323 2.7 2.4 K20306 TRAPPC9, TRS120 trafficking protein particle complex subunit 9 compare
mRNA_1677 10045 2.6 17.5 K15620 GOLPH3, GPP34 golgi phosphoprotein 3 compare
mRNA_3753 12121 2.5 17.7 K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase compare
mRNA_7833 16201 2.4 9.7 HMMPfam-Cryptococcal mannosyltransferase 1-PF11735 compare
mRNA_7515 15883 2.3 21.7 K07827 KRAS, KRAS2 GTPase KRas compare
mRNA_2876 11244 2.3 3.2 K18715 NUP159 nucleoporin NUP159 compare
mRNA_7071 15439 2.2 3.8 BLAST histone H3 h3.1 [Schizosaccharomyces japonicus yF... compare
mRNA_4866 13234 2.1 1.9 KOG2881 Predicted membrane protein compare
mRNA_604 8972 2.1 4.7 K17871 ndh1 NADH-ubiquinone reductase (non-electrogenic) compare
mRNA_2189 10557 2.1 6.4 K11236 CDC24 cell division control protein 24 compare
mRNA_3302 11670 2.1 6.3 K07232 chaC cation transport protein ChaC compare
mRNA_6883 15251 2.0 8.6 BLAST similar to An03g02750 [Aspergillus kawachii IFO 4308] compare
mRNA_811 9179 2.0 4.6 Interpro Glycosyl-transferase for dystroglycan compare
mRNA_5144 13512 2.0 4.6 BLAST putative mit domain-containing protein [Erysiphe neca... compare
mRNA_1000 9368 1.9 7.0 BLAST glycosyltransferase 2 [Moniliophthora roreri MCA ... compare
mRNA_2131 10499 1.9 4.4 K09580 PDIA1, P4HB protein disulfide-isomerase A1 compare
mRNA_1134 9502 1.8 2.9 K10685 UBLE1B, SAE2, UBA2 ubiquitin-like 1-activating enzyme E1 B compare
mRNA_1314 9682 1.8 3.5 BLAST carboxymethylenebutenolidase [Rhizoctonia solani AG-1... compare
mRNA_2372 10740 1.8 4.5 Hypothetical Protein compare
mRNA_942 9310 1.8 4.8 KOG1743 Ferric reductase-like proteins compare
mRNA_33 8401 1.8 8.3 HMMPfam-Myosin-binding striated muscle assembly central-PF11701,SUPERFAMILY--SSF48371 compare
mRNA_1538 9906 1.8 2.9 K20307 TRAPPC10, TRS130 trafficking protein particle complex subunit 10 compare
mRNA_6513 14881 1.8 11.7 HMMPfam-Glycosyl transferase family 90-PF05686,SMART-Putative lipopolysaccharide-modifying enzyme.-SM00672 compare
mRNA_209 8577 1.8 12.4 K12571 PAN2 PAB-dependent poly(A)-specific ribonuclease subunit 2 compare
mRNA_2741 11109 1.8 2.7 HMMPfam-Telomeric single stranded DNA binding POT1/CDC13-PF02765,SUPERFAMILY--SSF50249 compare
mRNA_4968 13336 1.8 7.2 KOG4464 Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) compare
mRNA_6958 15326 1.8 5.1 K09238 ACE2 metallothionein expression activator compare
mRNA_5102 13470 1.8 12.0 KOG0619 FOG Leucine rich repeat compare
mRNA_5540 13908 1.7 12.1 Interpro GDP-fucose protein O-fucosyltransferase compare
mRNA_2227 10595 1.7 1.7 K12392 AP1B1 AP-1 complex subunit beta-1 compare
mRNA_3639 12007 1.7 1.1 K11204 GCLC glutamate--cysteine ligase catalytic subunit compare
mRNA_4961 13329 1.7 0.9 Hypothetical Protein compare
mRNA_1534 9902 1.7 4.1 K12493 ARFGAP2_3 ADP-ribosylation factor GTPase-activating protein 2/3 compare
mRNA_1945 10313 1.7 8.4 Hypothetical Protein compare
mRNA_3807 12175 1.7 11.5 HMMPfam-Docking domain of Afi1 for Arf3 in vesicle trafficking-PF07792,HMMPfam-Stabilization of polarity axis-PF08616 compare
mRNA_5256 13624 1.7 4.2 SUPERFAMILY--SSF53448 compare
mRNA_5548 13916 1.6 4.2 KOG4006 Anti-proliferation factor BTG1/TOB compare
mRNA_6369 14737 1.6 4.5 Hypothetical Protein compare
mRNA_6267 14635 1.6 8.1 KOG1721 FOG Zn-finger compare
mRNA_6801 15169 1.6 7.9 K15279 SLC35C1, FUCT1 solute carrier family 35 (GDP-fucose transporter), member C1 compare
mRNA_1129 9497 1.6 3.6 K12391 AP1G1 AP-1 complex subunit gamma-1 compare
mRNA_6562 14930 1.6 3.6 K20353 SEC16 COPII coat assembly protein SEC16 compare
mRNA_2003 10371 1.6 8.5 KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif compare
mRNA_6463 14831 1.6 1.7 K10427 DCTN5 dynactin 5 compare
mRNA_6793 15161 1.6 10.6 KOG2375 Protein interacting with poly(A)-binding protein compare
mRNA_7510 15878 1.6 9.2 K11644 SIN3A paired amphipathic helix protein Sin3a compare
mRNA_3285 11653 1.5 4.1 KOG2069 Golgi transport complex subunit compare
mRNA_8226 16594 1.5 3.4 KOG0849 Transcription factor PRD and related proteins, contain PAX and HOX domains compare
mRNA_2241 10609 1.5 8.4 K12572 PAN3 PAB-dependent poly(A)-specific ribonuclease subunit 3 compare
mRNA_743 9111 1.5 3.0 K08493 VTI1 vesicle transport through interaction with t-SNAREs 1 compare
mRNA_5048 13416 1.5 2.2 HMMPfam-Animal haem peroxidase-PF03098,ProSiteProfiles-Animal heme peroxidase superfamily profile.-PS50292,SUPERFAMILY--SSF48113 compare
mRNA_3232 11600 1.5 0.9 ProSiteProfiles-BRCT domain profile.-PS50172 compare
mRNA_1614 9982 1.5 4.4 KOG2819 Uncharacterized conserved protein compare
mRNA_6839 15207 1.5 10.3 K17257 ITFG1 integrin alpha FG-GAP repeat containing protein 1 compare
mRNA_4060 12428 1.5 5.2 K01537 E3.6.3.8 Ca2+-transporting ATPase compare
mRNA_6819 15187 1.5 4.8 SUPERFAMILY--SSF103107 compare
mRNA_8351 16719 1.5 1.3 K14303 NUP160, NUP120 nuclear pore complex protein Nup160 compare
mRNA_7852 16220 1.5 1.7 Hypothetical Protein compare
mRNA_6539 14907 1.5 6.8 K19800 SCH9 serine/threonine protein kinase SCH9 compare
mRNA_3687 12055 1.4 2.9 K14837 NOP12 nucleolar protein 12 compare
mRNA_109 8477 1.4 1.6 Hypothetical Protein compare
mRNA_8043 16411 1.4 5.3 K15283 SLC35E1 solute carrier family 35, member E1 compare
mRNA_2101 10469 1.4 5.6 K12041 SLC9A6_7, NHE6_7 solute carrier family 9 (sodium/hydrogen exchanger), member 6/7 compare
mRNA_4514 12882 1.4 3.6 K03241 EIF2B3 translation initiation factor eIF-2B subunit gamma compare
mRNA_1844 10212 1.4 2.8 K16066 ydfG 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase compare
mRNA_602 8970 1.4 3.5 K14642 YND1 golgi apyrase compare
mRNA_2378 10746 1.4 2.8 Hypothetical Protein compare
mRNA_5988 14356 1.4 8.3 K06111 EXOC4, SEC8 exocyst complex component 4 compare
mRNA_3931 12299 1.4 5.8 BLAST protein [Lichtheimia corymbifera JMRC-FSU-9682] compare
mRNA_7125 15493 1.4 4.7 K11315 TADA3, ADA3, NGG1 transcriptional adapter 3 compare
mRNA_2373 10741 1.4 6.2 K08286 E2.7.11.- protein-serine/threonine kinase compare
mRNA_2505 10873 1.4 3.4 KOG3299 Uncharacterized conserved protein compare
mRNA_6536 14904 1.4 5.8 HMMPfam-Protein of unknown function (DUF837)-PF05769 compare
mRNA_624 8992 1.4 2.8 K13886 CORO1B_1C_6 coronin-1B/1C/6 compare
mRNA_274 8642 1.4 1.6 BLAST Putative Pc16g06240 protein [Torrubiella hemipterigena] compare
mRNA_1888 10256 1.4 2.8 HMMPfam-Protein of unknown function (DUF2423)-PF10338 compare
mRNA_4013 12381 1.4 0.8 HMMPfam-DJ-1/PfpI family-PF01965,HMMPfam-N-terminal domain of DJ-1_PfpI family-PF13587,SUPERFAMILY--SSF52317 compare
mRNA_5421 13789 1.3 3.0 Interpro Domain of unknown function (DUF5102) 0 compare
mRNA_5145 13513 1.3 8.5 Hypothetical Protein compare
mRNA_1615 9983 1.3 1.3 K03283 HSPA1_8 heat shock 70kDa protein 1/8 compare
mRNA_2971 11339 1.3 9.7 HMMPfam-Anp1-PF03452,SUPERFAMILY--SSF53448 compare
mRNA_6791 15159 1.3 2.4 K00888 PI4KA phosphatidylinositol 4-kinase A compare
mRNA_8332 16700 1.3 8.9 K10082 LMAN2, VIP36 lectin, mannose-binding 2 compare
mRNA_4302 12670 1.3 7.3 K07819 B3GALT1 beta-1,3-galactosyltransferase 1 compare
mRNA_2358 10726 1.3 0.5 Hypothetical Protein compare
mRNA_4280 12648 1.3 7.8 HMMPfam-Actin interacting protein 3-PF03915,SMART-Actin interacting protein 3-SM00806 compare
mRNA_2364 10732 1.3 3.0 K20471 COPD, ARCN1, RET2 coatomer subunit delta compare
mRNA_6506 14874 1.3 4.4 KOG2712 Transcriptional coactivator compare
mRNA_7461 15829 1.3 4.1 K08964 mtnB methylthioribulose-1-phosphate dehydratase compare
mRNA_3987 12355 1.3 3.5 K08576 CAPN7 calpain-7 compare
mRNA_5550 13918 1.3 1.6 K09424 REB1 Myb-like DNA-binding protein REB1 compare
mRNA_1873 10241 1.3 8.1 BLAST Rab geranylgeranyltransferase [Mycena chlorophos] compare
mRNA_5555 13923 1.3 2.4 K19984 EXOC5, SEC10 exocyst complex component 5 compare
mRNA_7674 16042 1.3 1.6 SUPERFAMILY--SSF48371 compare
mRNA_5603 13971 1.3 6.1 K09523 DNAJC3 DnaJ homolog subfamily C member 3 compare
mRNA_2244 10612 1.3 2.0 KOG4120 G/T mismatch-specific thymine DNA glycosylase compare
mRNA_8394 16762 1.3 5.5 KOG3680 Uncharacterized conserved protein compare
mRNA_2621 10989 1.2 11.5 K01711 gmd, GMDS GDPmannose 4,6-dehydratase compare
mRNA_8366 16734 1.2 2.7 BLAST similar to An01g09190 [Aspergillus kawachii IFO 4308] compare
mRNA_7474 15842 1.2 9.9 HMMPfam-Glycosyl transferases group 1-PF00534,HMMPfam-Starch synthase catalytic domain-PF08323,SUPERFAMILY--SSF53756 compare
mRNA_5651 14019 1.2 2.3 K13728 MAD2L2 mitotic spindle assembly checkpoint protein MAD2B compare
mRNA_8130 16498 1.2 5.6 BLAST transcription factor [Pseudozyma hubeiensis SY62] compare
mRNA_5397 13765 1.2 5.8 HMMPfam-Glycosyltransferase sugar-binding region containing DXD motif-PF04488,SUPERFAMILY--SSF53448 compare
mRNA_6411 14779 1.2 1.5 BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M... compare
mRNA_8334 16702 1.2 6.5 BLAST mtf1_muccl ame full transcription factor mtf1 [Licht... compare
mRNA_4101 12469 1.2 1.6 Hypothetical Protein compare
mRNA_3473 11841 1.2 7.9 K11578 ZW10, DSL1 protein transport protein DSL1/ZW10 compare
mRNA_4079 12447 1.2 10.2 KOG2518 5'-3' exonuclease compare
mRNA_887 9255 1.2 3.8 K04409 PAK1 p21-activated kinase 1 compare
mRNA_5234 13602 1.2 2.3 KOG0725 Reductases with broad range of substrate specificities compare
mRNA_8151 16519 1.2 9.7 K19846 SPA2 protein SPA2 compare
mRNA_7030 15398 1.2 8.0 SUPERFAMILY--SSF50685 compare
mRNA_6489 14857 1.2 9.2 KOG0327 Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases compare
mRNA_3305 11673 1.2 0.5 KOG3299 Uncharacterized conserved protein compare
mRNA_1367 9735 1.2 3.6 K03233 EEF1G elongation factor 1-gamma compare
mRNA_6487 14855 1.2 6.5 K11237 BEM1 bud emergence protein 1 compare
mRNA_2549 10917 1.2 1.5 HMMPfam-Chromatin modification-related protein EAF7-PF07904 compare
mRNA_1261 9629 1.2 1.0 K04712 DEGS sphingolipid Delta-4 desaturase compare
mRNA_1415 9783 1.2 7.0 Hypothetical Protein compare
mRNA_1911 10279 1.2 3.4 K14967 BRE2, CPS60 COMPASS component BRE2 compare
mRNA_7737 16105 1.2 1.9 HMMPfam-Antibiotic biosynthesis monooxygenase-PF03992,SUPERFAMILY--SSF54909 compare
mRNA_8237 16605 1.2 5.9 K04345 PKA protein kinase A compare
mRNA_6743 15111 1.2 3.0 K06671 STAG1_2, SCC3, IRR1 cohesin complex subunit SA-1/2 compare
mRNA_5126 13494 1.2 2.9 Hypothetical Protein compare
mRNA_2592 10960 1.2 1.0 HMMPfam-Protein of unknown function (DUF1762)-PF08574 compare
mRNA_1965 10333 1.1 4.0 K11422 SETD1, SET1 histone-lysine N-methyltransferase SETD1 compare
mRNA_2319 10687 1.1 2.9 KOG3872 FOG FHA domain compare
mRNA_2915 11283 1.1 3.4 Hypothetical Protein compare
mRNA_3439 11807 1.1 2.4 KOG1703 Adaptor protein Enigma and related PDZ-LIM proteins compare
mRNA_7383 15751 1.1 5.5 K19355 MAN mannan endo-1,4-beta-mannosidase compare
mRNA_4595 12963 1.1 0.3 KOG2186 Cell growth-regulating nucleolar protein compare
mRNA_4493 12861 1.1 2.4 SUPERFAMILY--SSF52047 compare
mRNA_2386 10754 1.1 5.1 K01530 E3.6.3.1 phospholipid-translocating ATPase compare
mRNA_3890 12258 1.1 6.1 HMMPfam-Pal1 cell morphology protein-PF08316 compare
mRNA_6439 14807 1.1 4.4 Hypothetical Protein compare
mRNA_5134 13502 1.1 2.7 Hypothetical Protein compare
mRNA_8214 16582 1.1 0.9 BLAST NADH-ubiquinone oxidoreductase 9.5 kDa subunit [R... compare
mRNA_3012 11380 1.1 7.0 K06269 PPP1C serine/threonine-protein phosphatase PP1 catalytic subunit compare
mRNA_2412 10780 1.1 4.5 K04378 SRF serum response factor compare
mRNA_5363 13731 1.1 0.5 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_6296 14664 1.1 3.2 Hypothetical Protein compare
mRNA_4526 12894 1.1 5.7 K12446 E2.7.1.46 L-arabinokinase compare
mRNA_4312 12680 1.1 7.9 K14802 DRS2, ATP8A phospholipid-transporting ATPase compare
mRNA_4321 12689 1.1 7.1 K14960 CXXC1, SPP1, CPS40 COMPASS component SPP1 compare
mRNA_5370 13738 1.1 1.5 K18443 GBF1 golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 compare
mRNA_7044 15412 1.1 5.3 KOG4299 PHD Zn-finger protein compare
mRNA_4292 12660 1.1 1.9 HMMPfam-Glycosyl hydrolases family 16-PF00722,SUPERFAMILY--SSF49899 compare
mRNA_2995 11363 1.1 6.9 K20290 COG3, SEC34 conserved oligomeric Golgi complex subunit 3 compare
mRNA_7083 15451 1.1 1.9 K18803 HPM1 protein-histidine N-methyltransferase compare
mRNA_7656 16024 1.1 1.5 Hypothetical Protein compare
mRNA_7536 15904 1.1 2.6 KOG2216 Conserved coiled/coiled coil protein compare
mRNA_5366 13734 1.1 4.1 KOG1752 Glutaredoxin and related proteins compare
mRNA_2392 10760 1.1 3.1 K10364 CAPZA capping protein (actin filament) muscle Z-line, alpha compare
mRNA_5093 13461 1.1 1.9 Hypothetical Protein compare
mRNA_2438 10806 1.1 1.1 HMMPfam-Predicted coiled-coil protein (DUF2205)-PF10224 compare
mRNA_1260 9628 1.1 10.0 Hypothetical Protein compare
mRNA_7818 16186 1.1 2.1 K10865 MRE11 double-strand break repair protein MRE11 compare
mRNA_5652 14020 1.1 1.8 KOG4443 Putative transcription factor HALR/MLL3, involved in embryonic development compare
mRNA_240 8608 1.1 3.1 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_7396 15764 1.1 1.3 K18584 ACTR3, ARP3 actin-related protein 3 compare
mRNA_4874 13242 1.1 0.8 KOG2922 Uncharacterized conserved protein compare
mRNA_6485 14853 1.1 2.4 K00826 E2.6.1.42, ilvE branched-chain amino acid aminotransferase compare
mRNA_953 9321 1.0 1.9 Hypothetical Protein compare
mRNA_5734 14102 1.0 0.7 K01183 E3.2.1.14 chitinase compare
mRNA_2721 11089 1.0 4.9 BLAST metallophosphoesterase domain-containing protein [Muc... compare
mRNA_6049 14417 1.0 4.8 K08517 SEC22 vesicle transport protein SEC22 compare
mRNA_7587 15955 1.0 6.0 HMMPfam-Protein of unknown function (DUF2413)-PF10310 compare
mRNA_6794 15162 1.0 3.2 K10773 NTH endonuclease III compare
mRNA_7229 15597 1.0 0.9 Hypothetical Protein compare
mRNA_2936 11304 1.0 3.0 Hypothetical Protein compare
mRNA_1450 9818 1.0 1.5 K20826 RPAP1 RNA polymerase II-associated protein 1 compare
mRNA_8232 16600 1.0 3.0 K12623 LSM4 U6 snRNA-associated Sm-like protein LSm4 compare
mRNA_4919 13287 1.0 7.5 K01768 E4.6.1.1 adenylate cyclase compare
mRNA_259 8627 1.0 3.4 HMMPfam-Domain of unknown function (DUF1771)-PF08590,ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103,ProSiteProfiles-Smr domain profile.-PS50828,SMART-zinc finger-SM00356 compare
mRNA_4419 12787 1.0 2.3 K11121 SIR2 NAD-dependent histone deacetylase SIR2 compare
mRNA_5155 13523 1.0 3.1 BLAST unknown [Tremella fuciformis] compare
mRNA_4381 12749 1.0 5.9 BLAST glycosyltransferase family 25 [Puccinia cf. psidii AE... compare
mRNA_3816 12184 1.0 10.1 KOG3613 Dopey and related predicted leucine zipper transcription factors compare
mRNA_4917 13285 1.0 1.5 KOG2920 Predicted methyltransferase compare
mRNA_6846 15214 1.0 1.3 K02603 ORC1 origin recognition complex subunit 1 compare
mRNA_756 9124 1.0 2.3 HMMPfam-Protein of unknown function (DUF3074)-PF11274,SUPERFAMILY--SSF55961 compare
mRNA_2034 10402 1.0 2.4 HMMPfam-Spherulation-specific family 4-PF12138 compare
mRNA_5617 13985 1.0 3.2 BLAST beta-flanking protein [Kwoniella dejecticola CBS ... compare
mRNA_7156 15524 1.0 4.0 K20102 YTHDF YTH domain-containing family protein compare
mRNA_2009 10377 1.0 2.9 BLAST ankyrin [Cenococcum geophilum 1.58] compare
mRNA_3585 11953 1.0 1.3 KOG1339 Aspartyl protease compare
mRNA_5935 14303 1.0 1.2 HMMPfam-Homeobox KN domain-PF05920,ProSiteProfiles-'Homeobox' domain profile.-PS50071,SUPERFAMILY--SSF46689 compare
mRNA_3773 12141 1.0 4.2 BLAST transmembrane protein, putative [Rhizoctonia solani A... compare
mRNA_1085 9453 1.0 1.7 Hypothetical Protein compare


Specific Phenotypes

None in this experiment

For Rhodosporidium toruloides IFO0880 in growth on ricinoleic acid experiments

For growth on ricinoleic acid YNB Methylricinoleic Acid across organisms

Metabolic Maps

Color code by fitness: see overview map or list of maps.