Experiment setAFACS_Top for Rhodosporidium toruloides IFO0880

Compare to:

Sorted High BODIPY Gate

200 most detrimental genes:

  gene name fitness t score description  
mRNA_224 8592 3.4 2.4 K07300 chaA, CAX Ca2+-H+ antiporter compare
mRNA_1934 10302 2.4 11.7 HMMPfam-Cryptococcal mannosyltransferase 1-PF11735 compare
mRNA_7833 16201 2.3 11.4 HMMPfam-Cryptococcal mannosyltransferase 1-PF11735 compare
mRNA_2003 10371 2.2 11.4 KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif compare
mRNA_6553 14921 2.0 8.4 SUPERFAMILY--SSF52266 compare
mRNA_5151 13519 1.9 5.3 HMMPfam-SUR7/PalI family-PF06687 compare
mRNA_2782 11150 1.8 2.1 HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232 compare
mRNA_1627 9995 1.8 1.7 K18551 SDT1 pyrimidine and pyridine-specific 5'-nucleotidase compare
mRNA_2189 10557 1.8 5.5 K11236 CDC24 cell division control protein 24 compare
mRNA_1614 9982 1.8 4.2 KOG2819 Uncharacterized conserved protein compare
mRNA_2521 10889 1.8 1.1 BLAST beta-glucosidase 1 precursor [Aspergillus rambellii] compare
mRNA_3753 12121 1.7 9.1 K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase compare
mRNA_5144 13512 1.7 4.4 BLAST putative mit domain-containing protein [Erysiphe neca... compare
mRNA_6212 14580 1.7 1.1 SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045 compare
mRNA_5611 13979 1.5 1.5 HMMPfam-Protein of unknown function (DUF2433)-PF10360 compare
mRNA_2437 10805 1.5 8.1 Hypothetical Protein compare
mRNA_7571 15939 1.5 1.3 K11450 KDM1A, AOF2, LSD1 lysine-specific histone demethylase 1A compare
mRNA_4801 13169 1.5 2.1 HMMPfam-Uncharacterized alpha/beta hydrolase domain (DUF2235)-PF09994 compare
mRNA_1844 10212 1.4 3.1 K16066 ydfG 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase compare
mRNA_3807 12175 1.4 13.4 HMMPfam-Docking domain of Afi1 for Arf3 in vesicle trafficking-PF07792,HMMPfam-Stabilization of polarity axis-PF08616 compare
mRNA_5145 13513 1.4 8.1 Hypothetical Protein compare
mRNA_3244 11612 1.3 1.6 Hypothetical Protein compare
mRNA_3302 11670 1.3 3.7 K07232 chaC cation transport protein ChaC compare
mRNA_8332 16700 1.3 5.6 K10082 LMAN2, VIP36 lectin, mannose-binding 2 compare
mRNA_5809 14177 1.3 3.2 KOG2979 Protein involved in DNA repair compare
mRNA_7515 15883 1.3 12.5 K07827 KRAS, KRAS2 GTPase KRas compare
mRNA_7197 15565 1.3 1.4 KOG0490 Transcription factor, contains HOX domain compare
mRNA_8467 16835 1.3 2.5 Hypothetical Protein compare
mRNA_6883 15251 1.3 7.4 BLAST similar to An03g02750 [Aspergillus kawachii IFO 4308] compare
mRNA_4968 13336 1.3 5.1 KOG4464 Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) compare
mRNA_7901 16269 1.2 1.9 KOG1605 TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) compare
mRNA_1654 10022 1.2 0.6 BLAST expressed protein [Cryptococcus neoformans var. neofo... compare
mRNA_7416 15784 1.2 0.2 Hypothetical Protein compare
mRNA_7604 15972 1.2 1.7 K09549 PFDN2 prefoldin subunit 2 compare
mRNA_8363 16731 1.2 3.1 KOG1693 emp24/gp25L/p24 family of membrane trafficking proteins compare
mRNA_6123 14491 1.2 2.0 BLAST DNA polymerase [Rhizoctonia solani] compare
mRNA_3729 12097 1.1 3.7 K15280 SLC35C2 solute carrier family 35, member C2 compare
mRNA_4464 12832 1.1 1.8 Hypothetical Protein compare
mRNA_5215 13583 1.1 1.7 KOG1940 Zn-finger protein compare
mRNA_4660 13028 1.1 1.8 Interpro Transcription-silencing protein, cryptic loci regulator Clr2 compare
mRNA_221 8589 1.1 6.0 HMMPfam-Squalene/phytoene synthase-PF00494,ProSitePatterns-Squalene and phytoene synthases signature 2.-PS01045,SUPERFAMILY--SSF48576,TIGRFAM-CarR_dom_SF lycopene cyclase domain-TIGR03462 compare
mRNA_1755 10123 1.1 7.0 K00326 E1.6.2.2 cytochrome-b5 reductase compare
mRNA_4777 13145 1.1 0.8 Hypothetical Protein compare
mRNA_7071 15439 1.1 3.0 BLAST histone H3 h3.1 [Schizosaccharomyces japonicus yF... compare
mRNA_1808 10176 1.1 3.8 Hypothetical Protein compare
mRNA_6301 14669 1.1 2.3 Hypothetical Protein compare
mRNA_3955 12323 1.0 0.8 K02355 fusA, GFM, EFG elongation factor G compare
mRNA_5978 14346 1.0 1.7 Hypothetical Protein compare
mRNA_132 8500 1.0 1.5 K16944 SEPT7, CDC3 septin 7 compare
mRNA_4022 12390 1.0 2.5 KOG2661 Peptidase family M48 compare
mRNA_6664 15032 1.0 1.1 K03165 TOP3 DNA topoisomerase III compare
mRNA_850 9218 1.0 2.2 SUPERFAMILY--SSF52047 compare
mRNA_1118 9486 1.0 3.4 HMMPfam-RTA1 like protein-PF04479 compare
mRNA_2599 10967 1.0 1.2 KOG2619 Fucosyltransferase compare
mRNA_7823 16191 1.0 1.3 K03011 RPB3, POLR2C DNA-directed RNA polymerase II subunit RPB3 compare
mRNA_2185 10553 1.0 1.9 HMMPfam-Copper fist DNA binding domain-PF00649,PRINTS-Copper fist domain signature-PR00617,ProSiteProfiles-Copper-fist DNA-binding domain profile.-PS50073,SMART-Copper-Fist-SM00412,SMART--SM01090,SUPERFAMILY--SSF57879 compare
mRNA_4153 12521 1.0 3.3 K20347 TMED2, EMP24 p24 family protein beta-1 compare
mRNA_3439 11807 1.0 3.4 KOG1703 Adaptor protein Enigma and related PDZ-LIM proteins compare
mRNA_2270 10638 1.0 4.3 K19833 CLA4 serine/threonine-protein kinase CLA4 compare
mRNA_5399 13767 1.0 3.2 K07078 K07078 uncharacterized protein compare
mRNA_4563 12931 1.0 5.3 KOG1601 GATA-4/5/6 transcription factors compare
mRNA_934 9302 1.0 3.2 K18726 FAF2, UBXD8 FAS-associated factor 2 compare
mRNA_2820 11188 1.0 0.3 HMMPfam-2-oxoacid dehydrogenases acyltransferase (catalytic domain)-PF00198,HMMPfam-Biotin-requiring enzyme-PF00364,HMMPfam-e3 binding domain-PF02817,SUPERFAMILY--SSF47005,SUPERFAMILY--SSF51230,SUPERFAMILY--SSF52777 compare
mRNA_5142 13510 1.0 3.7 K13577 SLC25A10, DIC solute carrier family 25 (mitochondrial dicarboxylate transporter), member 10 compare
mRNA_6182 14550 1.0 4.1 K06665 SSN6 glucose repression mediator protein compare
mRNA_658 9026 1.0 6.2 K11842 USP12_46 ubiquitin carboxyl-terminal hydrolase 12/46 compare
mRNA_5192 13560 1.0 1.7 KOG2814 Transcription coactivator complex, P50 component (LigT RNA ligase/phosphodiesterase family) compare
mRNA_6215 14583 1.0 2.7 Hypothetical Protein compare
mRNA_2358 10726 1.0 0.9 Hypothetical Protein compare
mRNA_5040 13408 0.9 3.8 K11987 PTGS2, COX2 prostaglandin-endoperoxide synthase 2 compare
mRNA_4349 12717 0.9 0.8 K02873 RP-L13e, RPL13 large subunit ribosomal protein L13e compare
mRNA_4392 12760 0.9 0.9 KOG3069 Peroxisomal NUDIX hydrolase compare
mRNA_3299 11667 0.9 4.9 K19704 PTC1 protein phosphatase PTC1 compare
mRNA_461 8829 0.9 2.3 Hypothetical Protein compare
mRNA_7225 15593 0.9 2.1 Hypothetical Protein compare
mRNA_2509 10877 0.9 1.6 HMMPfam-PI31 proteasome regulator-PF08577,HMMPfam-PI31 proteasome regulator N-terminal-PF11566 compare
mRNA_6230 14598 0.9 3.1 K10688 UBE2W, UBC16 ubiquitin-conjugating enzyme E2 W compare
mRNA_4662 13030 0.9 1.8 K20352 TMED10, ERV25 p24 family protein delta-1 compare
mRNA_6706 15074 0.9 2.6 K16261 YAT yeast amino acid transporter compare
mRNA_5606 13974 0.9 2.1 HMMPfam-Glycosyl hydrolase family 61-PF03443 compare
mRNA_3669 12037 0.9 1.7 KOG1756 Histone 2A compare
mRNA_7333 15701 0.9 2.9 SUPERFAMILY--SSF52047 compare
mRNA_6387 14755 0.9 2.5 Hypothetical Protein compare
mRNA_1519 9887 0.9 3.4 K03434 PIGL N-acetylglucosaminylphosphatidylinositol deacetylase compare
mRNA_6385 14753 0.9 0.5 K03107 SRP68 signal recognition particle subunit SRP68 compare
mRNA_1321 9689 0.9 0.8 K01687 ilvD dihydroxy-acid dehydratase compare
mRNA_5533 13901 0.9 1.3 Hypothetical Protein compare
mRNA_2757 11125 0.9 1.9 Hypothetical Protein compare
mRNA_6835 15203 0.9 3.5 Hypothetical Protein compare
mRNA_4966 13334 0.9 1.0 Hypothetical Protein compare
mRNA_5540 13908 0.9 5.9 Interpro GDP-fucose protein O-fucosyltransferase compare
mRNA_7078 15446 0.9 0.8 Hypothetical Protein compare
mRNA_3646 12014 0.9 7.4 Hypothetical Protein compare
mRNA_4171 12539 0.9 2.1 KOG2806 Chitinase compare
mRNA_4296 12664 0.9 2.8 Hypothetical Protein compare
mRNA_5147 13515 0.9 4.0 Hypothetical Protein compare
mRNA_7111 15479 0.9 2.9 Interpro Subunit 11 of the general transcription factor TFIIH compare
mRNA_6823 15191 0.9 1.0 BLAST TNFR/NGFR cysteine-rich region family protein [Rh... compare
mRNA_5729 14097 0.9 1.2 HMMPfam-MT-A70-PF05063,ProSiteProfiles-MT-A70-like family profile.-PS51143 compare
mRNA_2528 10896 0.9 1.7 HMMPfam-Fungal chitosanase of glycosyl hydrolase group 75-PF07335 compare
mRNA_3597 11965 0.9 1.2 K15562 BUR1, SGV1 serine/threonine-protein kinase BUR1 compare
mRNA_1995 10363 0.8 1.7 KOG0062 ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b compare
mRNA_7229 15597 0.8 1.2 Hypothetical Protein compare
mRNA_6097 14465 0.8 4.6 KOG4313 Thiamine pyrophosphokinase compare
mRNA_5754 14122 0.8 2.6 KOG1721 FOG Zn-finger compare
mRNA_4724 13092 0.8 3.2 Hypothetical Protein compare
mRNA_233 8601 0.8 1.8 K06287 maf septum formation protein compare
mRNA_5720 14088 0.8 3.7 K04392 RAC1 Ras-related C3 botulinum toxin substrate 1 compare
mRNA_7822 16190 0.8 0.9 Hypothetical Protein compare
mRNA_8118 16486 0.8 2.4 Hypothetical Protein compare
mRNA_1444 9812 0.8 2.2 KOG4173 Alpha-SNAP protein compare
mRNA_1428 9796 0.8 1.6 HMMPfam-Protein of unknown function (DUF3237)-PF11578 compare
mRNA_2487 10855 0.8 1.8 BLAST putative protein [Melanopsichium pennsylvanicum 4] compare
mRNA_7278 15646 0.8 5.3 HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701 compare
mRNA_8171 16539 0.8 2.0 HMMPfam-DnaJ domain-PF00226,ProSiteProfiles-dnaJ domain profile.-PS50076,SMART-DnaJ molecular chaperone homology domain-SM00271,SUPERFAMILY--SSF46565 compare
mRNA_5642 14010 0.8 0.7 Interpro Mitochondrial inner-membrane-bound regulator compare
mRNA_3746 12114 0.8 1.1 Hypothetical Protein compare
mRNA_4917 13285 0.8 0.9 KOG2920 Predicted methyltransferase compare
mRNA_7170 15538 0.8 3.6 Hypothetical Protein compare
mRNA_4526 12894 0.8 3.1 K12446 E2.7.1.46 L-arabinokinase compare
mRNA_5624 13992 0.8 0.8 KOG1611 Predicted short chain-type dehydrogenase compare
mRNA_7113 15481 0.8 1.2 Hypothetical Protein compare
mRNA_3745 12113 0.8 0.7 BLAST protein of unknown function [Taphrina deformans PYCC ... compare
mRNA_5234 13602 0.8 1.3 KOG0725 Reductases with broad range of substrate specificities compare
mRNA_1306 9674 0.8 2.0 HMMPfam-RNase H-PF00075,ProSiteProfiles-RNase H domain profile.-PS50879,SUPERFAMILY--SSF53098 compare
mRNA_7587 15955 0.8 4.4 HMMPfam-Protein of unknown function (DUF2413)-PF10310 compare
mRNA_4725 13093 0.8 1.3 Hypothetical Protein compare
mRNA_2645 11013 0.8 2.4 Hypothetical Protein compare
mRNA_5126 13494 0.8 2.2 Hypothetical Protein compare
mRNA_1282 9650 0.8 0.8 Hypothetical Protein compare
mRNA_4955 13323 0.8 0.5 K20306 TRAPPC9, TRS120 trafficking protein particle complex subunit 9 compare
mRNA_8152 16520 0.8 1.6 KOG2944 Glyoxalase compare
mRNA_3897 12265 0.8 2.0 K00459 ncd2, npd nitronate monooxygenase compare
mRNA_7378 15746 0.8 1.2 KOG1180 Acyl-CoA synthetase compare
mRNA_6284 14652 0.8 3.7 BLAST macrofage activating glycoprotein, putative [Rhizocto... compare
mRNA_4064 12432 0.8 1.9 HMMPfam-Rdx family-PF10262,SUPERFAMILY--SSF52833 compare
mRNA_6958 15326 0.8 3.3 K09238 ACE2 metallothionein expression activator compare
mRNA_7455 15823 0.8 0.8 KOG1740 Predicted mitochondrial/chloroplast ribosomal protein S17 compare
mRNA_4569 12937 0.8 0.7 HMMPfam-Integral peroxisomal membrane peroxin-PF06398 compare
mRNA_3034 11402 0.8 3.5 K05767 IQGAP2_3 Ras GTPase-activating-like protein IQGAP2/3 compare
mRNA_4385 12753 0.8 2.2 HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713 compare
mRNA_6798 15166 0.8 3.0 Hypothetical Protein compare
mRNA_4672 13040 0.8 1.6 K11979 UBR7 E3 ubiquitin-protein ligase UBR7 compare
mRNA_4369 12737 0.8 0.7 K03671 trxA thioredoxin 1 compare
mRNA_217 8585 0.8 3.5 K02292 crtO beta-carotene ketolase (CrtO type) compare
mRNA_1567 9935 0.8 3.9 KOG4129 Exopolyphosphatases and related proteins compare
mRNA_3981 12349 0.8 2.5 K10660 MARCH5 E3 ubiquitin-protein ligase MARCH5 compare
mRNA_2294 10662 0.8 2.1 KOG4131 Ngg1-interacting factor 3 protein NIF3L1 compare
mRNA_4023 12391 0.8 2.2 K01061 E3.1.1.45 carboxymethylenebutenolidase compare
mRNA_4137 12505 0.8 5.1 BLAST putative protein [Melanopsichium pennsylvanicum 4] compare
mRNA_7062 15430 0.8 1.3 HMMPfam-N-acetyltransferase-PF00797,SUPERFAMILY--SSF54001 compare
mRNA_3207 11575 0.8 4.0 Hypothetical Protein compare
mRNA_723 9091 0.8 4.3 K07127 uraH, pucM, hiuH 5-hydroxyisourate hydrolase compare
mRNA_1103 9471 0.8 2.0 KOG0252 Inorganic phosphate transporter compare
mRNA_6751 15119 0.8 3.5 K10578 UBE2J1, NCUBE1, UBC6 ubiquitin-conjugating enzyme E2 J1 compare
mRNA_7087 15455 0.8 1.6 Hypothetical Protein compare
mRNA_6487 14855 0.8 4.2 K11237 BEM1 bud emergence protein 1 compare
mRNA_657 9025 0.8 1.7 Hypothetical Protein compare
mRNA_5216 13584 0.8 0.9 K04648 DCTN1 dynactin 1 compare
mRNA_7011 15379 0.8 2.3 Hypothetical Protein compare
mRNA_5020 13388 0.8 1.5 K20178 VPS8 vacuolar protein sorting-associated protein 8 compare
mRNA_5382 13750 0.8 2.1 Hypothetical Protein compare
mRNA_5518 13886 0.7 2.2 SUPERFAMILY--SSF49599 compare
mRNA_5193 13561 0.7 2.5 KOG0253 Synaptic vesicle transporter SV2 (major facilitator superfamily) compare
mRNA_5008 13376 0.7 2.1 KOG2319 Vacuolar assembly/sorting protein VPS9 compare
mRNA_2851 11219 0.7 3.3 SUPERFAMILY--SSF52047 compare
mRNA_2751 11119 0.7 3.1 HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047 compare
mRNA_7482 15850 0.7 1.7 Hypothetical Protein compare
mRNA_3631 11999 0.7 0.4 Hypothetical Protein compare
mRNA_6688 15056 0.7 1.0 BLAST Wings apart-like protein [Ceraceosorus bombacis] compare
mRNA_4280 12648 0.7 4.0 HMMPfam-Actin interacting protein 3-PF03915,SMART-Actin interacting protein 3-SM00806 compare
mRNA_1946 10314 0.7 2.0 KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif compare
mRNA_1864 10232 0.7 0.6 SUPERFAMILY--SSF53300 compare
mRNA_6061 14429 0.7 1.6 KOG3772 M-phase inducer phosphatase compare
mRNA_3931 12299 0.7 4.2 BLAST protein [Lichtheimia corymbifera JMRC-FSU-9682] compare
mRNA_5153 13521 0.7 3.5 HMMPfam-Secretory lipase-PF03583,PIRSF--PIRSF029171,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SUPERFAMILY--SSF53474 compare
mRNA_7393 15761 0.7 2.4 HMMPfam-Velvet factor-PF11754 compare
mRNA_3835 12203 0.7 3.1 K09260 MEF2A MADS-box transcription enhancer factor 2A compare
mRNA_1240 9608 0.7 1.8 Interpro Protein of unknown function (DUF1275) 0 compare
mRNA_6711 15079 0.7 1.9 Hypothetical Protein compare
mRNA_3792 12160 0.7 0.7 K12811 DDX46, PRP5 ATP-dependent RNA helicase DDX46/PRP5 compare
mRNA_1141 9509 0.7 1.8 ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257 compare
mRNA_6464 14832 0.7 3.2 KOG1609 Protein involved in mRNA turnover and stability compare
mRNA_2604 10972 0.7 3.0 BLAST Esterase, SGNH hydrolase-type domain protein [Rho... compare
mRNA_7280 15648 0.7 2.2 Hypothetical Protein compare
mRNA_2295 10663 0.7 2.3 BLAST CsbD-like [Xanthophyllomyces dendrorhous] compare
mRNA_1154 9522 0.7 2.6 Hypothetical Protein compare
mRNA_7847 16215 0.7 2.4 KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily compare
mRNA_33 8401 0.7 4.3 HMMPfam-Myosin-binding striated muscle assembly central-PF11701,SUPERFAMILY--SSF48371 compare
mRNA_2293 10661 0.7 2.2 BLAST splicing arginine serine-rich 12 [Moesziomyces an... compare
mRNA_8443 16811 0.7 1.4 Hypothetical Protein compare
mRNA_7881 16249 0.7 1.3 Hypothetical Protein compare
mRNA_884 9252 0.7 1.4 Hypothetical Protein compare
mRNA_5935 14303 0.7 1.0 HMMPfam-Homeobox KN domain-PF05920,ProSiteProfiles-'Homeobox' domain profile.-PS50071,SUPERFAMILY--SSF46689 compare
mRNA_2211 10579 0.7 0.8 K09486 HYOU1 hypoxia up-regulated 1 compare
mRNA_7522 15890 0.7 4.2 HMMPfam-Helix-loop-helix DNA-binding domain-PF00010,ProSiteProfiles-Myc-type, basic helix-loop-helix (bHLH) domain profile.-PS50888,SMART-helix loop helix domain-SM00353,SUPERFAMILY--SSF47459 compare
mRNA_5620 13988 0.7 0.2 HMMPfam-GRF zinc finger-PF06839 compare
mRNA_8276 16644 0.7 6.2 K06630 YWHAE 14-3-3 protein epsilon compare
mRNA_7941 16309 0.7 1.9 Hypothetical Protein compare
mRNA_7808 16176 0.7 1.3 K20183 VPS39, VAM6 Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39 compare


Specific Phenotypes

None in this experiment

For Rhodosporidium toruloides IFO0880 in facs on lipid accumulation experiments

For facs on lipid accumulation CN120 across organisms

Metabolic Maps

Color code by fitness: see overview map or list of maps.