Experiment setAFACS_Bot for Rhodosporidium toruloides IFO0880

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Sorted Low BODIPY Gate

200 most detrimental genes:

  gene name fitness t score description  
mRNA_1448 9816 3.6 16.3 KOG4159 Predicted E3 ubiquitin ligase compare
mRNA_8013 16381 2.8 10.7 SUPERFAMILY--SSF58113 compare
mRNA_7116 15484 2.7 17.8 K04393 CDC42 cell division control protein 42 compare
mRNA_1657 10025 2.7 26.3 K08286 E2.7.11.- protein-serine/threonine kinase compare
mRNA_4052 12420 2.6 9.4 HMMPfam-Transcription factor Opi1-PF08618 compare
mRNA_628 8996 2.5 8.4 K17894 GATA2 GATA-binding protein 2 compare
mRNA_2675 11043 2.4 10.4 HMMPfam-Putative adipose-regulatory protein (Seipin)-PF06775 compare
mRNA_8092 16460 2.3 12.0 K14457 MOGAT2, MGAT2 2-acylglycerol O-acyltransferase 2 compare
mRNA_224 8592 2.3 1.4 K07300 chaA, CAX Ca2+-H+ antiporter compare
mRNA_3556 11924 2.1 12.8 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_5084 13452 2.1 9.9 Hypothetical Protein compare
mRNA_3523 11891 2.0 6.0 K08064 NFYA nuclear transcription factor Y, alpha compare
mRNA_3244 11612 2.0 2.2 Hypothetical Protein compare
mRNA_5620 13988 2.0 0.8 HMMPfam-GRF zinc finger-PF06839 compare
mRNA_2688 11056 1.9 2.7 Hypothetical Protein compare
mRNA_2891 11259 1.9 4.8 Hypothetical Protein compare
mRNA_4302 12670 1.8 10.4 K07819 B3GALT1 beta-1,3-galactosyltransferase 1 compare
mRNA_7273 15641 1.8 8.9 K15859 SKN7 osomolarity two-component system, response regulator SKN7 compare
mRNA_7153 15521 1.8 8.8 Hypothetical Protein compare
mRNA_3254 11622 1.8 2.6 K12161 URM1 ubiquitin related modifier 1 compare
mRNA_2699 11067 1.8 3.6 K08066 NFYC nuclear transcription factor Y, gamma compare
mRNA_2063 10431 1.8 9.9 SUPERFAMILY--SSF140860 compare
mRNA_658 9026 1.8 11.3 K11842 USP12_46 ubiquitin carboxyl-terminal hydrolase 12/46 compare
mRNA_6212 14580 1.8 1.3 SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045 compare
mRNA_4290 12658 1.7 1.9 Hypothetical Protein compare
mRNA_7113 15481 1.7 2.3 Hypothetical Protein compare
mRNA_4725 13093 1.7 2.6 Hypothetical Protein compare
mRNA_5725 14093 1.7 0.5 K03234 EEF2 elongation factor 2 compare
mRNA_3955 12323 1.6 1.2 K02355 fusA, GFM, EFG elongation factor G compare
mRNA_2885 11253 1.6 11.2 K20246 EGT1 L-histidine Nalpha-methyltransferase / hercynylcysteine S-oxide synthase compare
mRNA_274 8642 1.6 1.7 BLAST Putative Pc16g06240 protein [Torrubiella hemipterigena] compare
mRNA_5098 13466 1.6 3.1 K08065 NFYB nuclear transcription Y subunit beta compare
mRNA_3656 12024 1.6 2.1 Hypothetical Protein compare
mRNA_4541 12909 1.6 6.0 K03457 TC.NCS1 nucleobase-cation symporter-1, NCS1 family compare
mRNA_8213 16581 1.5 1.7 KOG1590 Uncharacterized conserved protein compare
mRNA_5173 13541 1.5 2.6 KOG1189 Global transcriptional regulator, cell division control protein compare
mRNA_5246 13614 1.5 3.5 K00411 UQCRFS1, RIP1, petA ubiquinol-cytochrome c reductase iron-sulfur subunit compare
mRNA_8155 16523 1.5 5.0 K15361 WDR48, UAF1 WD repeat-containing protein 48 compare
mRNA_4564 12932 1.4 7.6 K11844 USP16_45 ubiquitin carboxyl-terminal hydrolase 16/45 compare
mRNA_2521 10889 1.4 1.0 BLAST beta-glucosidase 1 precursor [Aspergillus rambellii] compare
mRNA_5142 13510 1.4 4.8 K13577 SLC25A10, DIC solute carrier family 25 (mitochondrial dicarboxylate transporter), member 10 compare
mRNA_2973 11341 1.4 11.8 K11996 MOCS3, UBA4 adenylyltransferase and sulfurtransferase compare
mRNA_3786 12154 1.4 4.9 K00006 GPD1 glycerol-3-phosphate dehydrogenase (NAD+) compare
mRNA_8007 16375 1.4 6.9 KOG0590 Checkpoint kinase and related serine/threonine protein kinases compare
mRNA_3585 11953 1.3 1.5 KOG1339 Aspartyl protease compare
mRNA_4449 12817 1.3 9.1 K14168 CTU1, NCS6 cytoplasmic tRNA 2-thiolation protein 1 compare
mRNA_2396 10764 1.3 8.7 K14169 CTU2, NCS2 cytoplasmic tRNA 2-thiolation protein 2 compare
mRNA_5552 13920 1.3 1.5 K03360 GRR1 F-box and leucine-rich repeat protein GRR1 compare
mRNA_5108 13476 1.3 3.5 BLAST V175_0103_1006-like protein [Amanita sp. 'sp-jack1'] compare
mRNA_7764 16132 1.3 3.0 Hypothetical Protein compare
mRNA_7152 15520 1.2 3.8 Hypothetical Protein compare
mRNA_1033 9401 1.2 1.8 KOG4653 Uncharacterized conserved protein compare
mRNA_8095 16463 1.2 7.3 K17508 PTC7, PPTC7 protein phosphatase PTC7 compare
mRNA_7063 15431 1.2 1.6 Hypothetical Protein compare
mRNA_5732 14100 1.2 3.3 HMMPfam-bZIP transcription factor-PF00170,HMMPfam-Minimal binding motif of Hap4 for binding to Hap2/3/5-PF10297,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,SUPERFAMILY--SSF57959 compare
mRNA_7315 15683 1.2 1.9 K05527 bolA BolA protein compare
mRNA_6308 14676 1.2 3.3 K09326 OTX1 homeobox protein OTX1 compare
mRNA_5071 13439 1.2 8.1 KOG3038 Histone acetyltransferase SAGA associated factor SGF29 compare
mRNA_6528 14896 1.2 1.8 K01514 PRUNE, PPX1 exopolyphosphatase compare
mRNA_7125 15493 1.2 4.1 K11315 TADA3, ADA3, NGG1 transcriptional adapter 3 compare
mRNA_1151 9519 1.2 1.0 Hypothetical Protein compare
mRNA_3239 11607 1.2 5.5 K15425 PPP4R2 serine/threonine-protein phosphatase 4 regulatory subunit 2 compare
mRNA_7386 15754 1.2 3.8 HMMPfam-F-box-like-PF12937 compare
mRNA_3533 11901 1.2 4.9 K08337 ATG7 ubiquitin-like modifier-activating enzyme ATG7 compare
mRNA_7869 16237 1.1 1.7 KOG4366 Predicted thioesterase compare
mRNA_4254 12622 1.1 2.3 HMMPfam-Lactonase, 7-bladed beta-propeller-PF10282,SUPERFAMILY--SSF75011 compare
mRNA_3948 12316 1.1 3.9 Hypothetical Protein compare
mRNA_5729 14097 1.1 1.7 HMMPfam-MT-A70-PF05063,ProSiteProfiles-MT-A70-like family profile.-PS51143 compare
mRNA_2241 10609 1.1 5.3 K12572 PAN3 PAB-dependent poly(A)-specific ribonuclease subunit 3 compare
mRNA_4005 12373 1.1 0.9 HMMPfam-bZIP transcription factor-PF00170,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959 compare
mRNA_4618 12986 1.1 1.0 Hypothetical Protein compare
mRNA_2089 10457 1.1 4.4 KOG0637 Sucrose transporter and related proteins compare
mRNA_3677 12045 1.1 4.9 KOG0266 WD40 repeat-containing protein compare
mRNA_1627 9995 1.1 1.0 K18551 SDT1 pyrimidine and pyridine-specific 5'-nucleotidase compare
mRNA_4741 13109 1.1 8.8 KOG2208 Vigilin compare
mRNA_3398 11766 1.1 6.7 Hypothetical Protein compare
mRNA_4992 13360 1.1 2.5 Hypothetical Protein compare
mRNA_7003 15371 1.1 2.3 KOG2394 WD40 protein DMR-N9 compare
mRNA_2185 10553 1.1 2.0 HMMPfam-Copper fist DNA binding domain-PF00649,PRINTS-Copper fist domain signature-PR00617,ProSiteProfiles-Copper-fist DNA-binding domain profile.-PS50073,SMART-Copper-Fist-SM00412,SMART--SM01090,SUPERFAMILY--SSF57879 compare
mRNA_2097 10465 1.1 1.0 K03217 yidC, spoIIIJ, OXA1, ccfA YidC/Oxa1 family membrane protein insertase compare
mRNA_4660 13028 1.0 1.5 Interpro Transcription-silencing protein, cryptic loci regulator Clr2 compare
mRNA_4524 12892 1.0 2.7 Hypothetical Protein compare
mRNA_1806 10174 1.0 2.6 BLAST related to C2H2 zinc finger protein [Ustilago hordei] compare
mRNA_1122 9490 1.0 6.8 BLAST glycoside hydrolase family 28 protein [Tulasnella cal... compare
mRNA_3203 11571 1.0 1.1 Hypothetical Protein compare
mRNA_5093 13461 1.0 1.7 Hypothetical Protein compare
mRNA_1215 9583 1.0 1.0 Hypothetical Protein compare
mRNA_640 9008 1.0 2.2 HMMPfam-UV radiation resistance protein and autophagy-related subunit 14-PF10186 compare
mRNA_7106 15474 1.0 1.3 K11313 SUPT3H, SPT3 transcription initiation protein SPT3 compare
mRNA_6139 14507 1.0 2.3 Hypothetical Protein compare
mRNA_7790 16158 1.0 1.0 Hypothetical Protein compare
mRNA_5329 13697 1.0 2.8 K02212 MCM4, CDC54 DNA replication licensing factor MCM4 compare
mRNA_5978 14346 1.0 1.8 Hypothetical Protein compare
mRNA_4405 12773 1.0 4.9 K05925 METTL3_14 mRNA (2'-O-methyladenosine-N6-)-methyltransferase compare
mRNA_2949 11317 1.0 3.4 K02267 COX6B cytochrome c oxidase subunit 6b compare
mRNA_1978 10346 1.0 8.1 K14409 SMG7, EST1C protein SMG7 compare
mRNA_2644 11012 1.0 0.8 SUPERFAMILY--SSF52058 compare
mRNA_5615 13983 1.0 2.6 HMMPfam-GRF zinc finger-PF06839 compare
mRNA_403 8771 1.0 7.0 Hypothetical Protein compare
mRNA_7884 16252 1.0 2.3 KOG1911 Heterochromatin-associated protein HP1 and related CHROMO domain proteins compare
mRNA_573 8941 1.0 1.6 BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ... compare
mRNA_4460 12828 1.0 3.1 SUPERFAMILY--SSF52047 compare
mRNA_2074 10442 1.0 1.0 HMMPfam-Chromate transporter-PF02417 compare
mRNA_5496 13864 1.0 1.4 HMMPfam-HSF-type DNA-binding-PF00447,SUPERFAMILY--SSF46785 compare
mRNA_7822 16190 1.0 1.1 Hypothetical Protein compare
mRNA_5603 13971 1.0 4.3 K09523 DNAJC3 DnaJ homolog subfamily C member 3 compare
mRNA_4899 13267 1.0 1.4 KOG4705 Uncharacterized conserved protein compare
mRNA_8001 16369 1.0 4.3 K01092 E3.1.3.25, IMPA, suhB myo-inositol-1(or 4)-monophosphatase compare
mRNA_1707 10075 0.9 6.7 BLAST related to SNF1-related protein kinase KIN10 [Melanop... compare
mRNA_3770 12138 0.9 2.5 K12606 RCD1, CNOT9, CAF40 CCR4-NOT transcription complex subunit 9 compare
mRNA_6485 14853 0.9 1.9 K00826 E2.6.1.42, ilvE branched-chain amino acid aminotransferase compare
mRNA_6428 14796 0.9 7.3 KOG2208 Vigilin compare
mRNA_6438 14806 0.9 1.8 K15456 KTI12 protein KTI12 compare
mRNA_4985 13353 0.9 1.2 BLAST vps9 domain protein [Zymoseptoria brevis] compare
mRNA_7297 15665 0.9 3.1 Hypothetical Protein compare
mRNA_775 9143 0.9 2.7 Hypothetical Protein compare
mRNA_158 8526 0.9 1.9 BLAST expressed protein [Cryptococcus neoformans var. neofo... compare
mRNA_5644 14012 0.9 2.8 Hypothetical Protein compare
mRNA_7369 15737 0.9 1.4 KOG1203 Predicted dehydrogenase compare
mRNA_7396 15764 0.9 1.4 K18584 ACTR3, ARP3 actin-related protein 3 compare
mRNA_8355 16723 0.9 2.4 KOG2111 Uncharacterized conserved protein, contains WD40 repeats compare
mRNA_5133 13501 0.9 4.1 Interpro Proteasome assembly chaperone 4 compare
mRNA_387 8755 0.9 1.6 Hypothetical Protein compare
mRNA_4459 12827 0.9 5.6 HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729 compare
mRNA_402 8770 0.9 9.6 BLAST N-terminal acetyltransferase catalytic subunit Nat1 [... compare
mRNA_5518 13886 0.9 2.0 SUPERFAMILY--SSF49599 compare
mRNA_722 9090 0.9 2.2 HMMPfam-Thiopurine S-methyltransferase (TPMT)-PF05724,ProSiteProfiles-Thiopurine or thiol or thiocyanate S-methyltransferase (TPMT) family profile.-PS51585,SUPERFAMILY--SSF53335 compare
mRNA_1055 9423 0.9 1.2 KOG0590 Checkpoint kinase and related serine/threonine protein kinases compare
mRNA_703 9071 0.9 4.5 K20223 IPO7, RANBP7 importin-7 compare
mRNA_2527 10895 0.9 3.3 BLAST protein DGCR14-like [Mucor ambiguus] compare
mRNA_1746 10114 0.9 1.7 KOG2897 DNA-binding protein YL1 and related proteins compare
mRNA_1260 9628 0.9 8.6 Hypothetical Protein compare
mRNA_6215 14583 0.9 2.6 Hypothetical Protein compare
mRNA_7499 15867 0.9 3.4 Hypothetical Protein compare
mRNA_2233 10601 0.9 1.3 Hypothetical Protein compare
mRNA_6074 14442 0.9 1.7 Hypothetical Protein compare
mRNA_6560 14928 0.9 1.2 Hypothetical Protein compare
mRNA_4806 13174 0.9 3.0 Hypothetical Protein compare
mRNA_7921 16289 0.9 0.9 KOG3022 Predicted ATPase, nucleotide-binding compare
mRNA_2082 10450 0.9 2.8 Hypothetical Protein compare
mRNA_7078 15446 0.9 0.8 Hypothetical Protein compare
mRNA_657 9025 0.9 1.8 Hypothetical Protein compare
mRNA_2352 10720 0.9 1.5 K02903 RP-L28e, RPL28 large subunit ribosomal protein L28e compare
mRNA_7100 15468 0.9 2.8 BLAST putative protein [Melanopsichium pennsylvanicum 4] compare
mRNA_1384 9752 0.9 2.4 KOG4472 Glycolipid 2-alpha-mannosyltransferase (alpha-1,2-mannosyltransferase) compare
mRNA_6843 15211 0.9 4.1 BLAST protein of unknown function [Taphrina deformans PYCC ... compare
mRNA_5794 14162 0.9 4.0 K01637 E4.1.3.1, aceA isocitrate lyase compare
mRNA_1741 10109 0.8 1.7 HMMPfam-Calcipressin-PF04847 compare
mRNA_6368 14736 0.8 1.3 KOG2049 Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) compare
mRNA_6685 15053 0.8 1.3 Hypothetical Protein compare
mRNA_6242 14610 0.8 3.6 K00826 E2.6.1.42, ilvE branched-chain amino acid aminotransferase compare
mRNA_6374 14742 0.8 5.9 K20464 OSBPL5_8, ORP5_8 oxysterol-binding protein-related protein 5/8 compare
mRNA_1834 10202 0.8 2.4 Hypothetical Protein compare
mRNA_3623 11991 0.8 2.7 HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928 compare
mRNA_5216 13584 0.8 1.1 K04648 DCTN1 dynactin 1 compare
mRNA_8124 16492 0.8 2.0 HMMPfam-FHA domain-PF00498,ProSiteProfiles-Forkhead-associated (FHA) domain profile.-PS50006,SMART-Forkhead associated domain-SM00240,SUPERFAMILY--SSF49879 compare
mRNA_4218 12586 0.8 4.5 K17491 SMEK, PPP4R3 protein phosphatase 4 regulatory subunit 3 compare
mRNA_4875 13243 0.8 1.7 ProSitePatterns-Tyrosine protein kinases specific active-site signature.-PS00109,SUPERFAMILY--SSF56112 compare
mRNA_1046 9414 0.8 4.5 K11346 ING4 inhibitor of growth protein 4 compare
mRNA_7674 16042 0.8 0.7 SUPERFAMILY--SSF48371 compare
mRNA_3341 11709 0.8 2.3 K20724 TMEM33 transmembrane protein 33 compare
mRNA_2172 10540 0.8 2.2 K00968 PCYT1 choline-phosphate cytidylyltransferase compare
mRNA_7891 16259 0.8 2.1 Hypothetical Protein compare
mRNA_3745 12113 0.8 0.6 BLAST protein of unknown function [Taphrina deformans PYCC ... compare
mRNA_1614 9982 0.8 3.9 KOG2819 Uncharacterized conserved protein compare
mRNA_8334 16702 0.8 5.4 BLAST mtf1_muccl ame full transcription factor mtf1 [Licht... compare
mRNA_7919 16287 0.8 2.2 K01489 cdd, CDA cytidine deaminase compare
mRNA_3834 12202 0.8 2.0 Hypothetical Protein compare
mRNA_162 8530 0.8 1.9 BLAST NADH dehydrogenase [ubiquinone] 1 alpha subcomplex su... compare
mRNA_7225 15593 0.8 1.4 Hypothetical Protein compare
mRNA_4391 12759 0.8 1.8 Hypothetical Protein compare
mRNA_6370 14738 0.8 2.2 K15692 RNF13, RZF E3 ubiquitin-protein ligase RNF13 compare
mRNA_7689 16057 0.8 2.5 BLAST triacylglycerol lipase [Pochonia chlamydosporia 170] compare
mRNA_2828 11196 0.8 1.3 Hypothetical Protein compare
mRNA_1253 9621 0.8 1.9 K04554 UBE2J2, NCUBE2, UBC6 ubiquitin-conjugating enzyme E2 J2 compare
mRNA_4836 13204 0.8 1.3 BLAST NEK protein kinase [Microbotryum lychnidis-dioicae p1... compare
mRNA_4801 13169 0.8 1.1 HMMPfam-Uncharacterized alpha/beta hydrolase domain (DUF2235)-PF09994 compare
mRNA_3135 11503 0.8 2.4 HMMPfam-Alpha/beta hydrolase family-PF12695,SUPERFAMILY--SSF53474 compare
mRNA_6882 15250 0.8 1.8 Hypothetical Protein compare
mRNA_5230 13598 0.8 5.5 K17906 ATG2 autophagy-related protein 2 compare
mRNA_2005 10373 0.8 1.8 K08286 E2.7.11.- protein-serine/threonine kinase compare
mRNA_1866 10234 0.8 1.7 KOG4455 Uncharacterized conserved protein compare
mRNA_2671 11039 0.8 2.9 K00111 glpA, glpD glycerol-3-phosphate dehydrogenase compare
mRNA_2528 10896 0.8 1.6 HMMPfam-Fungal chitosanase of glycosyl hydrolase group 75-PF07335 compare
mRNA_5215 13583 0.8 1.1 KOG1940 Zn-finger protein compare
mRNA_24 8392 0.8 1.9 Hypothetical Protein compare
mRNA_5608 13976 0.8 1.6 K03018 RPC1, POLR3A DNA-directed RNA polymerase III subunit RPC1 compare
mRNA_6205 14573 0.8 2.5 HMMPfam-Peptidase M50B-like-PF13398 compare
mRNA_5217 13585 0.8 2.2 Hypothetical Protein compare
mRNA_7482 15850 0.8 1.8 Hypothetical Protein compare
mRNA_7723 16091 0.8 1.3 HMMPfam-Domain of unknown function (DUF427)-PF04248 compare
mRNA_397 8765 0.8 2.6 SUPERFAMILY--SSF52047 compare
mRNA_3085 11453 0.8 3.8 K06269 PPP1C serine/threonine-protein phosphatase PP1 catalytic subunit compare
mRNA_121 8489 0.8 1.0 BLAST Pc20g03530 [Penicillium rubens Wisconsin 54-1255] compare
mRNA_8148 16516 0.8 1.5 HMMPfam-START domain-PF01852,ProSiteProfiles-START domain profile.-PS50848,SUPERFAMILY--SSF55961 compare
mRNA_8255 16623 0.8 1.4 K01792 E5.1.3.15 glucose-6-phosphate 1-epimerase compare
mRNA_2126 10494 0.8 1.8 Hypothetical Protein compare
mRNA_7239 15607 0.8 1.9 Hypothetical Protein compare
mRNA_4506 12874 0.8 3.1 KOG4754 Predicted phosphoglycerate mutase compare
mRNA_2452 10820 0.7 3.0 HMMPfam-Ribonuclease H2 non-catalytic subunit (Ylr154p-like)-PF08615 compare


Specific Phenotypes

None in this experiment

For Rhodosporidium toruloides IFO0880 in facs on lipid accumulation experiments

For facs on lipid accumulation CN120 across organisms

Metabolic Maps

Color code by fitness: see overview map or list of maps.