Experiment setAFACS_All for Rhodosporidium toruloides IFO0880

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Sorted No BODIPY Gate

200 most detrimental genes:

  gene name fitness t score description  
mRNA_224 8592 2.4 2.0 K07300 chaA, CAX Ca2+-H+ antiporter compare
mRNA_3019 11387 2.2 1.6 KOG2128 Ras GTPase-activating protein family - IQGAP compare
mRNA_274 8642 2.1 2.4 BLAST Putative Pc16g06240 protein [Torrubiella hemipterigena] compare
mRNA_5620 13988 2.1 1.2 HMMPfam-GRF zinc finger-PF06839 compare
mRNA_3244 11612 1.9 2.8 Hypothetical Protein compare
mRNA_6429 14797 1.8 2.4 BLAST putative protein [Melanopsichium pennsylvanicum 4] compare
mRNA_2820 11188 1.8 0.8 HMMPfam-2-oxoacid dehydrogenases acyltransferase (catalytic domain)-PF00198,HMMPfam-Biotin-requiring enzyme-PF00364,HMMPfam-e3 binding domain-PF02817,SUPERFAMILY--SSF47005,SUPERFAMILY--SSF51230,SUPERFAMILY--SSF52777 compare
mRNA_2876 11244 1.7 2.1 K18715 NUP159 nucleoporin NUP159 compare
mRNA_4290 12658 1.6 2.1 Hypothetical Protein compare
mRNA_6212 14580 1.4 1.3 SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045 compare
mRNA_7571 15939 1.3 1.2 K11450 KDM1A, AOF2, LSD1 lysine-specific histone demethylase 1A compare
mRNA_4504 12872 1.3 1.8 Hypothetical Protein compare
mRNA_7225 15593 1.2 3.4 Hypothetical Protein compare
mRNA_8081 16449 1.2 1.8 K00905 BCKDK [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] kinase compare
mRNA_3955 12323 1.2 0.9 K02355 fusA, GFM, EFG elongation factor G compare
mRNA_6401 14769 1.1 1.8 HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112 compare
mRNA_5978 14346 1.1 2.2 Hypothetical Protein compare
mRNA_5204 13572 1.1 0.9 Hypothetical Protein compare
mRNA_8152 16520 1.1 2.8 KOG2944 Glyoxalase compare
mRNA_3325 11693 1.1 0.6 Hypothetical Protein compare
mRNA_8193 16561 1.1 1.4 Hypothetical Protein compare
mRNA_1306 9674 1.1 3.3 HMMPfam-RNase H-PF00075,ProSiteProfiles-RNase H domain profile.-PS50879,SUPERFAMILY--SSF53098 compare
mRNA_5540 13908 1.1 7.7 Interpro GDP-fucose protein O-fucosyltransferase compare
mRNA_4464 12832 1.1 2.0 Hypothetical Protein compare
mRNA_5608 13976 1.1 2.9 K03018 RPC1, POLR3A DNA-directed RNA polymerase III subunit RPC1 compare
mRNA_4777 13145 1.0 0.8 Hypothetical Protein compare
mRNA_998 9366 1.0 2.7 Hypothetical Protein compare
mRNA_3833 12201 1.0 1.1 K15196 BRF1, GTF3B transcription factor IIIB 90 kDa subunit compare
mRNA_3981 12349 1.0 4.6 K10660 MARCH5 E3 ubiquitin-protein ligase MARCH5 compare
mRNA_2063 10431 1.0 5.7 SUPERFAMILY--SSF140860 compare
mRNA_6706 15074 1.0 2.9 K16261 YAT yeast amino acid transporter compare
mRNA_8189 16557 1.0 3.4 HMMPfam-alpha/beta hydrolase fold-PF07859,SUPERFAMILY--SSF53474 compare
mRNA_2189 10557 1.0 2.7 K11236 CDC24 cell division control protein 24 compare
mRNA_4861 13229 0.9 1.9 BLAST NADH-ubiquinone oxidoreductase [Sanghuangporus baumii] compare
mRNA_6973 15341 0.9 1.4 K11303 HAT1, KAT1 histone acetyltransferase 1 compare
mRNA_2185 10553 0.9 1.4 HMMPfam-Copper fist DNA binding domain-PF00649,PRINTS-Copper fist domain signature-PR00617,ProSiteProfiles-Copper-fist DNA-binding domain profile.-PS50073,SMART-Copper-Fist-SM00412,SMART--SM01090,SUPERFAMILY--SSF57879 compare
mRNA_441 8809 0.9 1.3 K13989 DERL2_3 Derlin-2/3 compare
mRNA_8467 16835 0.9 1.9 Hypothetical Protein compare
mRNA_4632 13000 0.9 1.7 K13107 RBMX2, IST3 RNA-binding motif protein, X-linked 2 compare
mRNA_2617 10985 0.9 2.1 HMMPfam-Carbonic anhydrase-PF00484,SMART-Carbonic anhydrase-SM00947,SUPERFAMILY--SSF53056 compare
mRNA_7011 15379 0.9 2.9 Hypothetical Protein compare
mRNA_3794 12162 0.9 2.0 KOG4618 Uncharacterized conserved protein compare
mRNA_6141 14509 0.9 1.8 HMMPfam-GGL domain-PF00631,SUPERFAMILY--SSF48670 compare
mRNA_5980 14348 0.9 3.1 K12592 C1D, LRP1 exosome complex protein LRP1 compare
mRNA_428 8796 0.9 2.5 HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735 compare
mRNA_2934 11302 0.9 2.2 Hypothetical Protein compare
mRNA_6448 14816 0.9 1.3 HMMPfam-F-box-like-PF12937 compare
mRNA_3745 12113 0.9 0.6 BLAST protein of unknown function [Taphrina deformans PYCC ... compare
mRNA_1118 9486 0.9 2.0 HMMPfam-RTA1 like protein-PF04479 compare
mRNA_8332 16700 0.9 4.0 K10082 LMAN2, VIP36 lectin, mannose-binding 2 compare
mRNA_7480 15848 0.8 0.7 K01868 TARS, thrS threonyl-tRNA synthetase compare
mRNA_2528 10896 0.8 1.7 HMMPfam-Fungal chitosanase of glycosyl hydrolase group 75-PF07335 compare
mRNA_145 8513 0.8 1.7 KOG3299 Uncharacterized conserved protein compare
mRNA_4992 13360 0.8 2.7 Hypothetical Protein compare
mRNA_8476 16844 0.8 1.6 BLAST glycoside hydrolase family 43 protein [Mycena chlorop... compare
mRNA_4263 12631 0.8 0.9 K10416 DYNC1LI, DNCLI dynein light intermediate chain 1, cytosolic compare
mRNA_6530 14898 0.8 3.1 K03809 wrbA NAD(P)H dehydrogenase (quinone) compare
mRNA_4716 13084 0.8 0.5 SUPERFAMILY--SSF55753 compare
mRNA_895 9263 0.8 -0.1 Hypothetical Protein compare
mRNA_1141 9509 0.8 1.8 ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257 compare
mRNA_1384 9752 0.8 2.2 KOG4472 Glycolipid 2-alpha-mannosyltransferase (alpha-1,2-mannosyltransferase) compare
mRNA_7428 15796 0.8 1.5 Interpro XLF-Cernunnos, XRcc4-like factor, NHEJ component compare
mRNA_3559 11927 0.8 0.5 K18622 ADD adducin compare
mRNA_3195 11563 0.8 2.7 Hypothetical Protein compare
mRNA_5642 14010 0.8 0.8 Interpro Mitochondrial inner-membrane-bound regulator compare
mRNA_6296 14664 0.8 1.9 Hypothetical Protein compare
mRNA_2357 10725 0.8 2.3 BLAST Immunoglobulin-like domain contaning protein [Rho... compare
mRNA_8121 16489 0.8 1.2 Hypothetical Protein compare
mRNA_4526 12894 0.8 3.7 K12446 E2.7.1.46 L-arabinokinase compare
mRNA_5647 14015 0.8 3.5 KOG4719 Nuclear pore complex protein compare
mRNA_1155 9523 0.8 1.9 ProSiteProfiles-CBS domain profile.-PS51371,SUPERFAMILY--SSF54631 compare
mRNA_182 8550 0.8 0.8 K19828 MTG1 mitochondrial GTPase 1 compare
mRNA_8370 16738 0.8 1.6 K12525 metL bifunctional aspartokinase / homoserine dehydrogenase 2 compare
mRNA_1260 9628 0.8 8.0 Hypothetical Protein compare
mRNA_2126 10494 0.8 2.4 Hypothetical Protein compare
mRNA_6860 15228 0.8 2.2 K07513 ACAA1 acetyl-CoA acyltransferase 1 compare
mRNA_5054 13422 0.8 1.2 Hypothetical Protein compare
mRNA_5021 13389 0.8 2.5 K14347 SLC10A7, P7 solute carrier family 10 (sodium/bile acid cotransporter), member 7 compare
mRNA_7229 15597 0.8 1.2 Hypothetical Protein compare
mRNA_1102 9470 0.8 5.1 K03327 TC.MATE, SLC47A, norM, mdtK, dinF multidrug resistance protein, MATE family compare
mRNA_7449 15817 0.7 1.7 BLAST GH19984 [Drosophila grimshawi] compare
mRNA_5592 13960 0.7 2.6 HMMPfam-Alcohol acetyltransferase-PF07247,SUPERFAMILY--SSF52777 compare
mRNA_6771 15139 0.7 0.4 Hypothetical Protein compare
mRNA_6688 15056 0.7 1.7 BLAST Wings apart-like protein [Ceraceosorus bombacis] compare
mRNA_7106 15474 0.7 1.0 K11313 SUPT3H, SPT3 transcription initiation protein SPT3 compare
mRNA_7146 15514 0.7 1.9 Hypothetical Protein compare
mRNA_2543 10911 0.7 2.7 Hypothetical Protein compare
mRNA_1088 9456 0.7 2.9 KOG3179 Predicted glutamine synthetase compare
mRNA_4505 12873 0.7 3.0 K18172 CMC2 COX assembly mitochondrial protein 2 compare
mRNA_4305 12673 0.7 2.4 SUPERFAMILY--SSF69989 compare
mRNA_647 9015 0.7 2.0 K09885 AQPF aquaporin rerated protein, other eukaryote compare
mRNA_2345 10713 0.7 2.9 KOG1399 Flavin-containing monooxygenase compare
mRNA_2317 10685 0.7 1.0 K02264 COX5A cytochrome c oxidase subunit 5a compare
mRNA_4171 12539 0.7 1.5 KOG2806 Chitinase compare
mRNA_4806 13174 0.7 2.5 Hypothetical Protein compare
mRNA_109 8477 0.7 1.0 Hypothetical Protein compare
mRNA_7455 15823 0.7 0.9 KOG1740 Predicted mitochondrial/chloroplast ribosomal protein S17 compare
mRNA_4213 12581 0.7 0.7 K01673 cynT, can carbonic anhydrase compare
mRNA_7647 16015 0.7 1.6 KOG2741 Dimeric dihydrodiol dehydrogenase compare
mRNA_7280 15648 0.7 2.0 Hypothetical Protein compare
mRNA_596 8964 0.7 2.3 Hypothetical Protein compare
mRNA_6775 15143 0.7 0.1 K14784 CMS1 protein CMS1 compare
mRNA_7077 15445 0.7 4.3 K18789 XGD1 xylogalacturonan beta-1,3-xylosyltransferase compare
mRNA_7790 16158 0.7 0.6 Hypothetical Protein compare
mRNA_1742 10110 0.7 1.9 SUPERFAMILY--SSF48097 compare
mRNA_5142 13510 0.7 2.9 K13577 SLC25A10, DIC solute carrier family 25 (mitochondrial dicarboxylate transporter), member 10 compare
mRNA_5960 14328 0.7 2.2 Hypothetical Protein compare
mRNA_5742 14110 0.7 1.8 BLAST spindle pole body protein [Moesziomyces antarcticus T... compare
mRNA_7369 15737 0.7 1.4 KOG1203 Predicted dehydrogenase compare
mRNA_2291 10659 0.7 2.2 HMMPfam-von Willebrand factor type A domain-PF13519,ProSiteProfiles-VWFA domain profile.-PS50234,SUPERFAMILY--SSF53300 compare
mRNA_2089 10457 0.7 3.2 KOG0637 Sucrose transporter and related proteins compare
mRNA_4406 12774 0.7 3.3 KOG2100 Dipeptidyl aminopeptidase compare
mRNA_5652 14020 0.7 1.3 KOG4443 Putative transcription factor HALR/MLL3, involved in embryonic development compare
mRNA_2915 11283 0.7 1.8 Hypothetical Protein compare
mRNA_4169 12537 0.7 2.3 K13299 GSTK1 glutathione S-transferase kappa 1 compare
mRNA_5040 13408 0.7 3.3 K11987 PTGS2, COX2 prostaglandin-endoperoxide synthase 2 compare
mRNA_60 8428 0.7 1.1 Hypothetical Protein compare
mRNA_5778 14146 0.7 1.7 HMMPfam-bZIP transcription factor-PF00170,HMMPfam-Transcription factor PAP1-PF08601,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF111430,SUPERFAMILY--SSF57959 compare
mRNA_4703 13071 0.7 1.1 Hypothetical Protein compare
mRNA_1096 9464 0.7 1.2 KOG1611 Predicted short chain-type dehydrogenase compare
mRNA_7386 15754 0.7 2.2 HMMPfam-F-box-like-PF12937 compare
mRNA_48 8416 0.7 1.0 HMMPfam-Serine hydrolase (FSH1)-PF03959,SUPERFAMILY--SSF53474 compare
mRNA_4521 12889 0.7 1.7 SUPERFAMILY--SSF117018 compare
mRNA_8255 16623 0.7 2.0 K01792 E5.1.3.15 glucose-6-phosphate 1-epimerase compare
mRNA_1926 10294 0.7 3.2 HMMPfam-GDSL-like Lipase/Acylhydrolase family-PF13472,SUPERFAMILY--SSF52266 compare
mRNA_965 9333 0.7 2.0 Hypothetical Protein compare
mRNA_1614 9982 0.7 2.5 KOG2819 Uncharacterized conserved protein compare
mRNA_3797 12165 0.7 2.1 Hypothetical Protein compare
mRNA_2699 11067 0.7 1.2 K08066 NFYC nuclear transcription factor Y, gamma compare
mRNA_4564 12932 0.7 3.3 K11844 USP16_45 ubiquitin carboxyl-terminal hydrolase 16/45 compare
mRNA_2645 11013 0.7 1.4 Hypothetical Protein compare
mRNA_6061 14429 0.7 1.9 KOG3772 M-phase inducer phosphatase compare
mRNA_6194 14562 0.7 2.8 SUPERFAMILY--SSF56112 compare
mRNA_5611 13979 0.7 1.0 HMMPfam-Protein of unknown function (DUF2433)-PF10360 compare
mRNA_7989 16357 0.7 2.0 HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232 compare
mRNA_1347 9715 0.7 1.4 Hypothetical Protein compare
mRNA_836 9204 0.6 1.3 K17387 KIF23 kinesin family member 23 compare
mRNA_8329 16697 0.6 1.0 KOG0527 HMG-box transcription factor compare
mRNA_5497 13865 0.6 1.9 KOG3872 FOG FHA domain compare
mRNA_5217 13585 0.6 2.0 Hypothetical Protein compare
mRNA_1110 9478 0.6 2.5 Hypothetical Protein compare
mRNA_5624 13992 0.6 0.6 KOG1611 Predicted short chain-type dehydrogenase compare
mRNA_6854 15222 0.6 2.6 K16219 NTMT1, METTL11A, NTM1 protein N-terminal methyltransferase compare
mRNA_2230 10598 0.6 0.9 HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SMART-Serine/Threonine protein kinases, catalytic domain-SM00220,SUPERFAMILY--SSF56112 compare
mRNA_4762 13130 0.6 0.9 HMMPfam-Fungal cellulose binding domain-PF00734,ProSitePatterns-CBM1 (carbohydrate binding type-1) domain signature.-PS00562,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF57180 compare
mRNA_2742 11110 0.6 3.0 K18880 HCD1 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase compare
mRNA_6595 14963 0.6 3.2 Hypothetical Protein compare
mRNA_6798 15166 0.6 2.4 Hypothetical Protein compare
mRNA_3582 11950 0.6 3.5 HMMPfam-Polycystin cation channel-PF08016 compare
mRNA_2198 10566 0.6 1.4 Hypothetical Protein compare
mRNA_158 8526 0.6 1.4 BLAST expressed protein [Cryptococcus neoformans var. neofo... compare
mRNA_2407 10775 0.6 0.7 K10880 XRCC3 DNA-repair protein XRCC3 compare
mRNA_6046 14414 0.6 2.2 Hypothetical Protein compare
mRNA_3770 12138 0.6 1.6 K12606 RCD1, CNOT9, CAF40 CCR4-NOT transcription complex subunit 9 compare
mRNA_8353 16721 0.6 1.8 BLAST Clampless protein 1 [Leucoagaricus sp. SymC.cos] compare
mRNA_1272 9640 0.6 1.7 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 compare
mRNA_8357 16725 0.6 2.2 K01739 metB cystathionine gamma-synthase compare
mRNA_6431 14799 0.6 3.1 Hypothetical Protein compare
mRNA_1566 9934 0.6 1.6 Hypothetical Protein compare
mRNA_5874 14242 0.6 1.9 K04536 GNB1 guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 compare
mRNA_4349 12717 0.6 0.6 K02873 RP-L13e, RPL13 large subunit ribosomal protein L13e compare
mRNA_132 8500 0.6 1.1 K16944 SEPT7, CDC3 septin 7 compare
mRNA_5730 14098 0.6 1.9 SUPERFAMILY--SSF47113 compare
mRNA_7975 16343 0.6 2.0 KOG0762 Mitochondrial carrier protein compare
mRNA_456 8824 0.6 1.8 Hypothetical Protein compare
mRNA_6492 14860 0.6 2.0 KOG3269 Predicted membrane protein compare
mRNA_7542 15910 0.6 1.6 HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473 compare
mRNA_2721 11089 0.6 4.4 BLAST metallophosphoesterase domain-containing protein [Muc... compare
mRNA_5706 14074 0.6 1.9 Hypothetical Protein compare
mRNA_3342 11710 0.6 2.4 PRINTS-Proline rich extensin signature-PR01217 compare
mRNA_3792 12160 0.6 1.1 K12811 DDX46, PRP5 ATP-dependent RNA helicase DDX46/PRP5 compare
mRNA_942 9310 0.6 1.4 KOG1743 Ferric reductase-like proteins compare
mRNA_4757 13125 0.6 3.8 Hypothetical Protein compare
mRNA_4241 12609 0.6 2.6 Hypothetical Protein compare
mRNA_8149 16517 0.6 1.5 KOG1198 Zinc-binding oxidoreductase compare
mRNA_7674 16042 0.6 0.3 SUPERFAMILY--SSF48371 compare
mRNA_8126 16494 0.6 3.2 BLAST putative 15-O-acetyltransferase Tri3 [Moniliophthora ... compare
mRNA_3727 12095 0.6 1.6 SMART-Leucine rich repeat, ribonuclease inhibitor type-SM00368,SUPERFAMILY--SSF52047 compare
mRNA_5310 13678 0.6 2.0 Hypothetical Protein compare
mRNA_3474 11842 0.6 0.8 HMMPfam-Protein of unknown function (DUF667)-PF05018 compare
mRNA_4899 13267 0.6 0.8 KOG4705 Uncharacterized conserved protein compare
mRNA_6392 14760 0.6 2.6 KOG4533 Uncharacterized conserved protein compare
mRNA_6128 14496 0.6 2.6 BLAST DEHA2B11858p [Debaryomyces hansenii CBS767] compare
mRNA_5518 13886 0.6 1.4 SUPERFAMILY--SSF49599 compare
mRNA_3669 12037 0.6 1.3 KOG1756 Histone 2A compare
mRNA_235 8603 0.6 1.3 KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases compare
mRNA_5465 13833 0.6 1.5 Hypothetical Protein compare
mRNA_2005 10373 0.6 1.6 K08286 E2.7.11.- protein-serine/threonine kinase compare
mRNA_3631 11999 0.6 0.5 Hypothetical Protein compare
mRNA_5804 14172 0.6 1.0 Hypothetical Protein compare
mRNA_2480 10848 0.6 1.5 KOG0907 Thioredoxin compare
mRNA_6711 15079 0.6 1.6 Hypothetical Protein compare
mRNA_7823 16191 0.6 0.9 K03011 RPB3, POLR2C DNA-directed RNA polymerase II subunit RPB3 compare
mRNA_3232 11600 0.6 0.6 ProSiteProfiles-BRCT domain profile.-PS50172 compare
mRNA_7087 15455 0.6 1.5 Hypothetical Protein compare
mRNA_5833 14201 0.6 2.5 K09705 K09705 uncharacterized protein compare
mRNA_4618 12986 0.6 0.6 Hypothetical Protein compare
mRNA_7268 15636 0.6 1.9 Hypothetical Protein compare
mRNA_203 8571 0.6 1.9 SUPERFAMILY--SSF51197 compare
mRNA_3677 12045 0.6 2.8 KOG0266 WD40 repeat-containing protein compare


Specific Phenotypes

None in this experiment

For Rhodosporidium toruloides IFO0880 in facs on lipid accumulation experiments

For facs on lipid accumulation CN120 across organisms

Metabolic Maps

Color code by fitness: see overview map or list of maps.