Experiment setABuoy_YPD_Med for Rhodosporidium toruloides IFO0880

Compare to:

40 hrs Median Buoyancy

200 most detrimental genes:

  gene name fitness t score description  
mRNA_858 9226 2.1 1.4 K10599 PRPF19, PRP19 pre-mRNA-processing factor 19 compare
mRNA_2 8370 1.9 2.5 PRINTS-Proline rich extensin signature-PR01217 compare
mRNA_8133 16501 1.8 4.2 HMMPfam-Senescence-associated protein-PF06911 compare
mRNA_5369 13737 1.7 2.4 K03627 MBF1 putative transcription factor compare
mRNA_7441 15809 1.6 1.4 K08884 K08884 serine/threonine protein kinase, bacterial compare
mRNA_7448 15816 1.6 1.1 BLAST putative protein of unknown function [Pseudozyma ... compare
mRNA_5620 13988 1.5 2.0 HMMPfam-GRF zinc finger-PF06839 compare
mRNA_4764 13132 1.5 2.6 K12842 SR140 U2-associated protein SR140 compare
mRNA_7855 16223 1.4 2.7 K15443 TRM82, WDR4 tRNA (guanine-N(7)-)-methyltransferase subunit TRM82 compare
mRNA_1437 9805 1.4 1.2 K01526 E3.6.1.42 guanosine-diphosphatase compare
mRNA_7480 15848 1.4 1.7 K01868 TARS, thrS threonyl-tRNA synthetase compare
mRNA_3232 11600 1.4 1.5 ProSiteProfiles-BRCT domain profile.-PS50172 compare
mRNA_8010 16378 1.4 1.9 K15414 C1QBP complement component 1 Q subcomponent-binding protein, mitochondrial compare
mRNA_6649 15017 1.4 0.5 K12580 CNOT3, NOT3 CCR4-NOT transcription complex subunit 3 compare
mRNA_8020 16388 1.3 3.2 K19841 STE50 protein STE50 compare
mRNA_4961 13329 1.3 0.7 Hypothetical Protein compare
mRNA_2485 10853 1.3 1.3 K07760 CDK cyclin-dependent kinase compare
mRNA_5354 13722 1.2 1.6 KOG0557 Dihydrolipoamide acetyltransferase compare
mRNA_7434 15802 1.2 1.0 HMMPfam-Outer membrane protein TOM13-PF08219 compare
mRNA_7912 16280 1.2 1.5 K11434 PRMT1 type I protein arginine methyltransferase compare
mRNA_4109 12477 1.2 2.3 Hypothetical Protein compare
mRNA_6457 14825 1.2 1.5 Hypothetical Protein compare
mRNA_7197 15565 1.2 1.3 KOG0490 Transcription factor, contains HOX domain compare
mRNA_6568 14936 1.1 1.9 BLAST Protein IWS1 homolog A [Rhizoctonia solani] compare
mRNA_3516 11884 1.1 2.0 K01466 allB allantoinase compare
mRNA_7648 16016 1.1 1.9 K01705 LYS4 homoaconitate hydratase compare
mRNA_7790 16158 1.1 1.2 Hypothetical Protein compare
mRNA_2111 10479 1.1 0.8 K10575 UBE2G1, UBC7 ubiquitin-conjugating enzyme E2 G1 compare
mRNA_988 9356 1.1 1.7 BLAST glycerol-3-phosphate O-acyltransferase [Sanghuangporu... compare
mRNA_3354 11722 1.0 1.8 KOG2395 Protein involved in vacuole import and degradation compare
mRNA_3405 11773 1.0 1.9 K17922 SNX8, MVP1 sorting nexin-8 compare
mRNA_2874 11242 1.0 0.2 K00555 TRMT1, trm1 tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase compare
mRNA_8413 16781 1.0 2.6 KOG4484 Uncharacterized conserved protein compare
mRNA_3541 11909 1.0 1.3 K01754 E4.3.1.19, ilvA, tdcB threonine dehydratase compare
mRNA_4270 12638 1.0 1.8 Hypothetical Protein compare
mRNA_7433 15801 1.0 0.9 K10356 MYO1 myosin I compare
mRNA_7095 15463 1.0 1.1 Hypothetical Protein compare
mRNA_7416 15784 1.0 1.0 Hypothetical Protein compare
mRNA_2822 11190 1.0 0.5 SUPERFAMILY--SSF52047 compare
mRNA_7637 16005 1.0 0.8 K12197 CHMP1, VPS46, DID2 charged multivesicular body protein 1 compare
mRNA_4041 12409 1.0 1.3 HMMPfam-Sds3-like-PF08598 compare
mRNA_8457 16825 0.9 2.8 K02728 PSMA4 20S proteasome subunit alpha 3 compare
mRNA_8366 16734 0.9 2.6 BLAST similar to An01g09190 [Aspergillus kawachii IFO 4308] compare
mRNA_2541 10909 0.9 1.2 HMMPfam-Hemerythrin HHE cation binding domain-PF01814 compare
mRNA_3832 12200 0.9 0.8 Hypothetical Protein compare
mRNA_4504 12872 0.9 1.9 Hypothetical Protein compare
mRNA_8174 16542 0.9 1.7 K00645 fabD [acyl-carrier-protein] S-malonyltransferase compare
mRNA_5204 13572 0.9 1.1 Hypothetical Protein compare
mRNA_6905 15273 0.9 2.7 K14300 NUP133 nuclear pore complex protein Nup133 compare
mRNA_5509 13877 0.9 2.1 ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850 compare
mRNA_6416 14784 0.9 1.4 Hypothetical Protein compare
mRNA_3015 11383 0.9 0.9 KOG3252 Uncharacterized conserved protein compare
mRNA_2670 11038 0.9 1.4 SUPERFAMILY--SSF52058 compare
mRNA_3132 11500 0.9 1.4 Hypothetical Protein compare
mRNA_5381 13749 0.9 2.4 Hypothetical Protein compare
mRNA_2212 10580 0.9 0.7 K04441 P38 p38 MAP kinase compare
mRNA_4672 13040 0.9 3.1 K11979 UBR7 E3 ubiquitin-protein ligase UBR7 compare
mRNA_1096 9464 0.9 1.4 KOG1611 Predicted short chain-type dehydrogenase compare
mRNA_3891 12259 0.9 2.4 K07889 RAB5C Ras-related protein Rab-5C compare
mRNA_709 9077 0.9 1.6 K08775 BRCA2, FANCD1 breast cancer 2 susceptibility protein compare
mRNA_6664 15032 0.9 1.2 K03165 TOP3 DNA topoisomerase III compare
mRNA_702 9070 0.8 1.2 BLAST RAN guanine nucleotide release factor [Moesziomyces a... compare
mRNA_1618 9986 0.8 1.5 Hypothetical Protein compare
mRNA_4479 12847 0.8 0.5 K17290 HTATIP2 oxidoreductase compare
mRNA_884 9252 0.8 1.5 Hypothetical Protein compare
mRNA_2074 10442 0.8 1.4 HMMPfam-Chromate transporter-PF02417 compare
mRNA_6687 15055 0.8 2.1 BLAST Wings apart-like protein [Xanthophyllomyces dendrorhous] compare
mRNA_5550 13918 0.8 1.1 K09424 REB1 Myb-like DNA-binding protein REB1 compare
mRNA_8353 16721 0.8 3.2 BLAST Clampless protein 1 [Leucoagaricus sp. SymC.cos] compare
mRNA_7891 16259 0.8 1.9 Hypothetical Protein compare
mRNA_2424 10792 0.8 2.5 KOG1605 TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) compare
mRNA_4670 13038 0.8 1.0 Hypothetical Protein compare
mRNA_1630 9998 0.8 3.0 SUPERFAMILY--SSF81383 compare
mRNA_7126 15494 0.8 3.3 K15122 SLC41A solute carrier family 41 compare
mRNA_393 8761 0.8 2.0 Hypothetical Protein compare
mRNA_2230 10598 0.8 1.3 HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SMART-Serine/Threonine protein kinases, catalytic domain-SM00220,SUPERFAMILY--SSF56112 compare
mRNA_6385 14753 0.8 1.0 K03107 SRP68 signal recognition particle subunit SRP68 compare
mRNA_5465 13833 0.8 2.6 Hypothetical Protein compare
mRNA_2879 11247 0.8 1.8 HMMPfam-Protein of unknown function (DUF3237)-PF11578 compare
mRNA_5983 14351 0.8 0.9 Hypothetical Protein compare
mRNA_4563 12931 0.8 3.1 KOG1601 GATA-4/5/6 transcription factors compare
mRNA_2646 11014 0.8 1.6 HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52058 compare
mRNA_4197 12565 0.8 3.9 K00512 CYP17A steroid 17alpha-monooxygenase / 17alpha-hydroxyprogesterone deacetylase compare
mRNA_5616 13984 0.8 1.1 HMMPfam-GRF zinc finger-PF06839 compare
mRNA_5737 14105 0.7 1.4 HMMPfam-Arsenite-resistance protein 2-PF04959,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157 compare
mRNA_5805 14173 0.7 1.4 HMMPfam-Ion transport protein-PF00520,SUPERFAMILY--SSF81324 compare
mRNA_4328 12696 0.7 1.5 HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383 compare
mRNA_4515 12883 0.7 1.2 SUPERFAMILY--SSF51735 compare
mRNA_7449 15817 0.7 1.9 BLAST GH19984 [Drosophila grimshawi] compare
mRNA_374 8742 0.7 1.1 Hypothetical Protein compare
mRNA_4721 13089 0.7 0.5 K10643 CNOT4, NOT4, MOT2 CCR4-NOT transcription complex subunit 4 compare
mRNA_4910 13278 0.7 1.3 K14555 UTP13, TBL3 U3 small nucleolar RNA-associated protein 13 compare
mRNA_4642 13010 0.7 1.4 Hypothetical Protein compare
mRNA_8181 16549 0.7 1.0 KOG1752 Glutaredoxin and related proteins compare
mRNA_2669 11037 0.7 3.6 Hypothetical Protein compare
mRNA_6401 14769 0.7 1.3 HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112 compare
mRNA_6192 14560 0.7 2.3 Hypothetical Protein compare
mRNA_3214 11582 0.7 0.9 KOG3989 Beta-2-glycoprotein I compare
mRNA_1558 9926 0.7 2.1 KOG4155 FOG WD40 repeat compare
mRNA_1287 9655 0.7 3.1 KOG1087 Cytosolic sorting protein GGA2/TOM1 compare
mRNA_1421 9789 0.7 2.5 K06950 K06950 uncharacterized protein compare
mRNA_2862 11230 0.7 2.5 PRINTS-Proline rich extensin signature-PR01217 compare
mRNA_7737 16105 0.7 1.7 HMMPfam-Antibiotic biosynthesis monooxygenase-PF03992,SUPERFAMILY--SSF54909 compare
mRNA_2527 10895 0.7 2.0 BLAST protein DGCR14-like [Mucor ambiguus] compare
mRNA_1543 9911 0.7 2.5 Hypothetical Protein compare
mRNA_8382 16750 0.7 2.7 K00799 GST, gst glutathione S-transferase compare
mRNA_6808 15176 0.7 1.6 K12856 PRPF8, PRP8 pre-mRNA-processing factor 8 compare
mRNA_8440 16808 0.7 1.0 Hypothetical Protein compare
mRNA_2595 10963 0.7 1.5 K14012 SHP1, UBX1, NSFL1C UBX domain-containing protein 1 compare
mRNA_1056 9424 0.7 2.7 Hypothetical Protein compare
mRNA_660 9028 0.7 2.4 K13289 CTSA, CPY cathepsin A (carboxypeptidase C) compare
mRNA_7089 15457 0.7 1.6 Hypothetical Protein compare
mRNA_5518 13886 0.7 2.4 SUPERFAMILY--SSF49599 compare
mRNA_1031 9399 0.7 2.0 Hypothetical Protein compare
mRNA_6268 14636 0.7 1.0 HMMPfam-Survival motor neuron protein (SMN)-PF06003 compare
mRNA_296 8664 0.7 1.0 K20177 VPS3, TGFBRAP1 vacuolar protein sorting-associated protein 3 compare
mRNA_7453 15821 0.7 1.1 K14407 CSTF2, RNA15 cleavage stimulation factor subunit 2 compare
mRNA_8269 16637 0.7 2.2 Hypothetical Protein compare
mRNA_2701 11069 0.7 0.1 HMMPfam-Glycosyltransferase sugar-binding region containing DXD motif-PF04488,SUPERFAMILY--SSF53448 compare
mRNA_6590 14958 0.7 0.8 K03009 RPB12, POLR2K DNA-directed RNA polymerases I, II, and III subunit RPABC4 compare
mRNA_3800 12168 0.7 2.1 K14715 SLC39A9, ZIP9 solute carrier family 39 (zinc transporter), member 9 compare
mRNA_5192 13560 0.7 1.6 KOG2814 Transcription coactivator complex, P50 component (LigT RNA ligase/phosphodiesterase family) compare
mRNA_4060 12428 0.7 3.8 K01537 E3.6.3.8 Ca2+-transporting ATPase compare
mRNA_1321 9689 0.7 0.7 K01687 ilvD dihydroxy-acid dehydratase compare
mRNA_6488 14856 0.7 1.2 K01655 LYS21, LYS20 homocitrate synthase compare
mRNA_5328 13696 0.7 1.7 HMMPfam-ATP adenylyltransferase-PF09830,SUPERFAMILY--SSF54197 compare
mRNA_3917 12285 0.7 1.7 KOG4479 Transcription factor e(y)2 compare
mRNA_7584 15952 0.7 1.6 KOG0546 HSP90 co-chaperone CPR7/Cyclophilin compare
mRNA_688 9056 0.7 1.7 Hypothetical Protein compare
mRNA_4660 13028 0.7 1.2 Interpro Transcription-silencing protein, cryptic loci regulator Clr2 compare
mRNA_1969 10337 0.7 1.7 K14961 RBBP5, SWD1, CPS50 COMPASS component SWD1 compare
mRNA_2281 10649 0.7 1.0 K12190 VPS36, EAP45 ESCRT-II complex subunit VPS36 compare
mRNA_4387 12755 0.7 1.3 HMMPfam-Ctf8-PF09696 compare
mRNA_1214 9582 0.7 1.3 Hypothetical Protein compare
mRNA_4182 12550 0.7 2.9 K13288 orn, REX2, REXO2 oligoribonuclease compare
mRNA_6196 14564 0.6 2.7 Hypothetical Protein compare
mRNA_285 8653 0.6 1.3 Hypothetical Protein compare
mRNA_7392 15760 0.6 0.9 Hypothetical Protein compare
mRNA_5048 13416 0.6 1.4 HMMPfam-Animal haem peroxidase-PF03098,ProSiteProfiles-Animal heme peroxidase superfamily profile.-PS50292,SUPERFAMILY--SSF48113 compare
mRNA_3988 12356 0.6 0.7 Hypothetical Protein compare
mRNA_6784 15152 0.6 1.4 Hypothetical Protein compare
mRNA_5138 13506 0.6 2.1 K20359 RABAC1, PRAF1 PRA1 family protein 1 compare
mRNA_6285 14653 0.6 1.4 K05610 UCHL5, UCH37 ubiquitin carboxyl-terminal hydrolase L5 compare
mRNA_4464 12832 0.6 1.3 Hypothetical Protein compare
mRNA_1418 9786 0.6 2.0 HMMPfam-Fungal protein of unknown function (DUF1748)-PF08520 compare
mRNA_2828 11196 0.6 1.9 Hypothetical Protein compare
mRNA_3722 12090 0.6 1.6 K11251 H2A histone H2A compare
mRNA_7916 16284 0.6 2.9 K08683 HSD17B10 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
mRNA_645 9013 0.6 0.9 KOG3104 Mod5 protein sorting/negative effector of RNA Pol III synthesis compare
mRNA_1749 10117 0.6 2.2 Hypothetical Protein compare
mRNA_4654 13022 0.6 0.9 KOG4253 Tryptophan-rich basic nuclear protein compare
mRNA_2688 11056 0.6 1.6 Hypothetical Protein compare
mRNA_3756 12124 0.6 2.3 HMMPfam-Protein of unknown function (DUF2665)-PF11654 compare
mRNA_7355 15723 0.6 1.9 HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232 compare
mRNA_6463 14831 0.6 1.0 K10427 DCTN5 dynactin 5 compare
mRNA_2005 10373 0.6 1.1 K08286 E2.7.11.- protein-serine/threonine kinase compare
mRNA_460 8828 0.6 1.5 K15177 LEO1 RNA polymerase-associated protein LEO1 compare
mRNA_2251 10619 0.6 1.8 KOG3313 Molecular chaperone Prefoldin, subunit 3 compare
mRNA_7738 16106 0.6 2.4 HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097 compare
mRNA_4801 13169 0.6 1.2 HMMPfam-Uncharacterized alpha/beta hydrolase domain (DUF2235)-PF09994 compare
mRNA_8419 16787 0.6 0.9 K14310 NUP205, NUP192 nuclear pore complex protein Nup205 compare
mRNA_7732 16100 0.6 1.2 Hypothetical Protein compare
mRNA_7647 16015 0.6 2.1 KOG2741 Dimeric dihydrodiol dehydrogenase compare
mRNA_4305 12673 0.6 1.4 SUPERFAMILY--SSF69989 compare
mRNA_1574 9942 0.6 1.0 K06867 K06867 uncharacterized protein compare
mRNA_1916 10284 0.6 1.6 HMMPfam-bZIP transcription factor-PF00170,HMMPfam-Domain of unknown function (DUF3425)-PF11905,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959 compare
mRNA_7554 15922 0.6 0.4 K07359 CAMKK calcium/calmodulin-dependent protein kinase kinase compare
mRNA_4043 12411 0.6 1.4 Hypothetical Protein compare
mRNA_1591 9959 0.6 4.5 K01835 pgm phosphoglucomutase compare
mRNA_5174 13542 0.6 1.9 Hypothetical Protein compare
mRNA_1034 9402 0.6 0.9 SMART-N-terminal domain of CBF1 interacting co-repressor CIR-SM01083 compare
mRNA_7668 16036 0.6 2.0 K18042 STYX serine/threonine/tyrosine-interacting protein compare
mRNA_2468 10836 0.6 2.9 HMMPfam-Protein of unknown function (DUF3605)-PF12239 compare
mRNA_5860 14228 0.6 2.3 K19770 RNASEK ribonuclease kappa compare
mRNA_225 8593 0.6 1.9 KOG0619 FOG Leucine rich repeat compare
mRNA_4966 13334 0.6 -0.6 Hypothetical Protein compare
mRNA_5079 13447 0.6 2.4 HMMPfam-TRAF-type zinc finger-PF02176,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145 compare
mRNA_4897 13265 0.6 1.3 K01759 GLO1, gloA lactoylglutathione lyase compare
mRNA_3737 12105 0.6 1.0 BLAST TPR-2 domain protein [Rhizoctonia solani AG-3 Rhs1AP] compare
mRNA_3736 12104 0.6 1.1 K00573 E2.1.1.77, pcm protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
mRNA_6614 14982 0.6 1.1 HMMPfam-MRC1-like domain-PF09444 compare
mRNA_5366 13734 0.6 2.2 KOG1752 Glutaredoxin and related proteins compare
mRNA_2233 10601 0.6 0.6 Hypothetical Protein compare
mRNA_7116 15484 0.6 5.3 K04393 CDC42 cell division control protein 42 compare
mRNA_8307 16675 0.6 1.2 Hypothetical Protein compare
mRNA_2407 10775 0.6 1.0 K10880 XRCC3 DNA-repair protein XRCC3 compare
mRNA_5052 13420 0.6 1.4 Hypothetical Protein compare
mRNA_4144 12512 0.6 3.4 K01669 phrB deoxyribodipyrimidine photo-lyase compare
mRNA_3203 11571 0.6 1.4 Hypothetical Protein compare
mRNA_4263 12631 0.6 1.0 K10416 DYNC1LI, DNCLI dynein light intermediate chain 1, cytosolic compare
mRNA_5772 14140 0.6 2.9 BLAST m serotype precursor [Moniliophthora roreri MCA 2... compare
mRNA_8368 16736 0.6 1.5 K07119 K07119 uncharacterized protein compare
mRNA_8216 16584 0.6 0.9 K14376 PAP poly(A) polymerase compare
mRNA_2863 11231 0.6 1.1 KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
mRNA_4101 12469 0.6 0.8 Hypothetical Protein compare
mRNA_2798 11166 0.6 1.0 K03537 POP5 ribonuclease P/MRP protein subunit POP5 compare
mRNA_1581 9949 0.6 1.1 HMMPfam-Protein of unknown function (DUF3759)-PF12585 compare
mRNA_1883 10251 0.6 2.6 KOG2665 Predicted FAD-dependent oxidoreductase compare
mRNA_2516 10884 0.6 2.4 KOG0627 Heat shock transcription factor compare
mRNA_6772 15140 0.6 0.4 KOG0202 Ca2+ transporting ATPase compare


Specific Phenotypes

None in this experiment

For Rhodosporidium toruloides IFO0880 in ypd buoyancy experiments

For ypd buoyancy unknown across organisms

Metabolic Maps

Color code by fitness: see overview map or list of maps.