Experiment setABuoy_YPD_Bot for Rhodosporidium toruloides IFO0880

Compare to:

40 hrs Low Buoyancy

200 most important genes:

  gene name fitness t score description  
mRNA_4086 12454 -5.5 -3.3 Hypothetical Protein compare
mRNA_2707 11075 -4.9 -14.5 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_7374 15742 -4.1 -2.4 Hypothetical Protein compare
mRNA_2430 10798 -3.9 -13.3 K09467 MIG zinc-finger protein CreA/MIG compare
mRNA_1228 9596 -3.9 -13.6 K00693 GYS glycogen synthase compare
mRNA_1657 10025 -3.5 -28.5 K08286 E2.7.11.- protein-serine/threonine kinase compare
mRNA_4226 12594 -3.2 -19.6 K00700 GBE1, glgB 1,4-alpha-glucan branching enzyme compare
mRNA_1896 10264 -3.1 -8.3 K00844 HK hexokinase compare
mRNA_3254 11622 -2.8 -2.1 K12161 URM1 ubiquitin related modifier 1 compare
mRNA_2396 10764 -2.8 -16.9 K14169 CTU2, NCS2 cytoplasmic tRNA 2-thiolation protein 2 compare
mRNA_2973 11341 -2.8 -15.3 K11996 MOCS3, UBA4 adenylyltransferase and sulfurtransferase compare
mRNA_1483 9851 -2.7 -1.6 BLAST Protein priB [Grifola frondosa] compare
mRNA_6278 14646 -2.7 -3.6 K17080 PHB1 prohibitin 1 compare
mRNA_2891 11259 -2.6 -3.3 Hypothetical Protein compare
mRNA_4449 12817 -2.6 -14.1 K14168 CTU1, NCS6 cytoplasmic tRNA 2-thiolation protein 1 compare
mRNA_6369 14737 -2.5 -4.2 Hypothetical Protein compare
mRNA_1906 10274 -2.4 -6.0 KOG0627 Heat shock transcription factor compare
mRNA_6550 14918 -2.4 -7.9 K11374 ELP2 elongator complex protein 2 compare
mRNA_7541 15909 -2.4 -20.2 K04564 SOD2 superoxide dismutase, Fe-Mn family compare
mRNA_34 8402 -2.2 -2.2 BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ... compare
mRNA_2173 10541 -2.0 -2.3 K03950 NDUFA6 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 6 compare
mRNA_5682 14050 -1.9 -1.3 K03349 APC2 anaphase-promoting complex subunit 2 compare
mRNA_6989 15357 -1.9 -5.2 K11836 USP5_13, UBP14 ubiquitin carboxyl-terminal hydrolase 5/13 compare
mRNA_6438 14806 -1.9 -4.1 K15456 KTI12 protein KTI12 compare
mRNA_1660 10028 -1.9 -3.3 Hypothetical Protein compare
mRNA_313 8681 -1.8 -1.6 Hypothetical Protein compare
mRNA_5171 13539 -1.8 -9.7 KOG2262 Sexual differentiation process protein ISP4 compare
mRNA_4659 13027 -1.8 -2.5 KOG1134 Uncharacterized conserved protein compare
mRNA_7796 16164 -1.8 -3.1 K11322 EPC enhancer of polycomb-like protein compare
mRNA_406 8774 -1.8 -2.0 HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735 compare
mRNA_7568 15936 -1.7 -1.1 K18753 ZFP36L butyrate response factor 1 compare
mRNA_6975 15343 -1.7 -11.3 Hypothetical Protein compare
mRNA_1686 10054 -1.7 -1.5 BLAST putative protein [Melanopsichium pennsylvanicum 4] compare
mRNA_7922 16290 -1.7 -3.6 K17065 DNM1L dynamin 1-like protein compare
mRNA_913 9281 -1.7 -2.0 Hypothetical Protein compare
mRNA_6821 15189 -1.6 -7.7 K07739 ELP3, KAT9 elongator complex protein 3 compare
mRNA_8371 16739 -1.6 -1.1 HMMPfam-GPR1/FUN34/yaaH family-PF01184 compare
mRNA_2521 10889 -1.6 -1.3 BLAST beta-glucosidase 1 precursor [Aspergillus rambellii] compare
mRNA_5863 14231 -1.5 -2.8 K09281 K09281 copper-fist transcription factor compare
mRNA_3383 11751 -1.5 -0.6 HMMPfam-BSD domain-PF03909,ProSiteProfiles-BSD domain profile.-PS50858,SMART-domain in transcription factors and synapse-associated proteins-SM00751,SUPERFAMILY--SSF140383 compare
mRNA_25 8393 -1.5 -2.6 Hypothetical Protein compare
mRNA_5902 14270 -1.5 -3.4 K08336 ATG12 ubiquitin-like protein ATG12 compare
mRNA_5912 14280 -1.4 -1.7 K11375 ELP4 elongator complex protein 4 compare
mRNA_815 9183 -1.4 -1.3 K04555 UBE2G2, UBC7 ubiquitin-conjugating enzyme E2 G2 compare
mRNA_5634 14002 -1.3 -8.3 K00750 GYG1, GYG2 glycogenin compare
mRNA_3955 12323 -1.3 -0.9 K02355 fusA, GFM, EFG elongation factor G compare
mRNA_5891 14259 -1.3 -2.0 K11788 ADE5 phosphoribosylamine--glycine ligase / phosphoribosylformylglycinamidine cyclo-ligase compare
mRNA_3419 11787 -1.3 -4.8 K01120 cpdP 3',5'-cyclic-nucleotide phosphodiesterase compare
mRNA_6348 14716 -1.3 -4.6 K11373 ELP1, IKI3, IKBKAP elongator complex protein 1 compare
mRNA_7869 16237 -1.3 -2.6 KOG4366 Predicted thioesterase compare
mRNA_4595 12963 -1.3 -1.2 KOG2186 Cell growth-regulating nucleolar protein compare
mRNA_4175 12543 -1.3 -7.9 K03939 NDUFS6 NADH dehydrogenase (ubiquinone) Fe-S protein 6 compare
mRNA_3414 11782 -1.2 -1.6 Hypothetical Protein compare
mRNA_7219 15587 -1.2 -1.0 K15053 CHMP7 charged multivesicular body protein 7 compare
mRNA_4885 13253 -1.2 -2.4 K03105 SRP19 signal recognition particle subunit SRP19 compare
mRNA_3988 12356 -1.2 -1.3 Hypothetical Protein compare
mRNA_2905 11273 -1.2 -3.7 Hypothetical Protein compare
mRNA_7528 15896 -1.2 -0.9 Hypothetical Protein compare
mRNA_4138 12506 -1.2 -1.8 HMMPfam-Cytochrome c oxidase subunit VIIa-PF02238 compare
mRNA_4222 12590 -1.2 -5.3 K17969 FIS1, TTC11, MDV2 mitochondrial fission 1 protein compare
mRNA_963 9331 -1.2 -3.2 K15109 SLC25A20_29, CACT, CACL, CRC1 solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29 compare
mRNA_5533 13901 -1.2 -1.9 Hypothetical Protein compare
mRNA_2631 10999 -1.2 -5.8 K14803 PTC2_3 protein phosphatase PTC2/3 compare
mRNA_7637 16005 -1.1 -0.6 K12197 CHMP1, VPS46, DID2 charged multivesicular body protein 1 compare
mRNA_4144 12512 -1.1 -5.2 K01669 phrB deoxyribodipyrimidine photo-lyase compare
mRNA_2807 11175 -1.1 -6.9 K11485 MTF2, PCL2 polycomb-like protein 2 compare
mRNA_4660 13028 -1.1 -0.5 Interpro Transcription-silencing protein, cryptic loci regulator Clr2 compare
mRNA_915 9283 -1.1 -1.2 K01950 E6.3.5.1, NADSYN1, QNS1, nadE NAD+ synthase (glutamine-hydrolysing) compare
mRNA_4092 12460 -1.1 -1.4 KOG0941 E3 ubiquitin protein ligase compare
mRNA_1543 9911 -1.1 -2.2 Hypothetical Protein compare
mRNA_2551 10919 -1.1 -3.1 K00799 GST, gst glutathione S-transferase compare
mRNA_3641 12009 -1.1 -1.1 K17615 PPG1 serine/threonine-protein phosphatase PPG1 compare
mRNA_2965 11333 -1.1 -4.3 KOG1721 FOG Zn-finger compare
mRNA_3033 11401 -1.1 -7.8 BLAST related to transcription factor medusa [Melanopsichiu... compare
mRNA_2352 10720 -1.1 -1.7 K02903 RP-L28e, RPL28 large subunit ribosomal protein L28e compare
mRNA_4237 12605 -1.1 -1.2 K15100 SLC25A1, CTP solute carrier family 25 (mitochondrial citrate transporter), member 1 compare
mRNA_3484 11852 -1.1 -2.6 Hypothetical Protein compare
mRNA_275 8643 -1.1 -1.5 BLAST nitrogen assimilation transcription factor [Rhodo... compare
mRNA_547 8915 -1.1 -2.2 KOG2385 Uncharacterized conserved protein compare
mRNA_7330 15698 -1.0 -2.4 KOG0409 Predicted dehydrogenase compare
mRNA_4022 12390 -1.0 -2.9 KOG2661 Peptidase family M48 compare
mRNA_8081 16449 -1.0 -1.5 K00905 BCKDK [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] kinase compare
mRNA_5704 14072 -1.0 -5.7 KOG2483 Upstream transcription factor 2/L-myc-2 protein compare
mRNA_2211 10579 -1.0 -1.4 K09486 HYOU1 hypoxia up-regulated 1 compare
mRNA_7195 15563 -1.0 -9.1 KOG0519 Sensory transduction histidine kinase compare
mRNA_8247 16615 -1.0 -2.6 K01426 E3.5.1.4, amiE amidase compare
mRNA_4136 12504 -1.0 -4.5 K19838 SST2 GTPase-activating protein SST2 compare
mRNA_5101 13469 -1.0 -1.4 K12669 OST3, OST6 oligosaccharyltransferase complex subunit gamma compare
mRNA_2820 11188 -1.0 -0.7 HMMPfam-2-oxoacid dehydrogenases acyltransferase (catalytic domain)-PF00198,HMMPfam-Biotin-requiring enzyme-PF00364,HMMPfam-e3 binding domain-PF02817,SUPERFAMILY--SSF47005,SUPERFAMILY--SSF51230,SUPERFAMILY--SSF52777 compare
mRNA_6950 15318 -1.0 -5.2 KOG4505 Na+/H+ antiporter compare
mRNA_1435 9803 -1.0 -0.7 Hypothetical Protein compare
mRNA_3924 12292 -1.0 -0.9 KOG1993 Nuclear transport receptor KAP120 (importin beta superfamily) compare
mRNA_3216 11584 -1.0 -3.1 K12881 THOC4, ALY THO complex subunit 4 compare
mRNA_4707 13075 -1.0 -1.9 KOG4431 Uncharacterized protein, induced by hypoxia compare
mRNA_6297 14665 -1.0 -4.7 K17970 MDV1, FIS2 mitochondrial division protein 1 compare
mRNA_6443 14811 -1.0 -0.5 K10427 DCTN5 dynactin 5 compare
mRNA_2511 10879 -1.0 -0.5 Hypothetical Protein compare
mRNA_7631 15999 -1.0 -2.4 KOG0226 RNA-binding proteins compare
mRNA_1701 10069 -1.0 -2.0 K03522 fixB, etfA electron transfer flavoprotein alpha subunit compare
mRNA_4220 12588 -1.0 -6.0 K19932 NCS1 neuronal calcium sensor 1 compare
mRNA_514 8882 -1.0 -2.1 KOG0417 Ubiquitin-protein ligase compare
mRNA_2587 10955 -1.0 -1.4 K04368 MAP2K1, MEK1 mitogen-activated protein kinase kinase 1 compare
mRNA_2365 10733 -1.0 -3.6 HMMPfam-C2 domain-PF00168,HMMPfam-Munc13 (mammalian uncoordinated) homology domain-PF10540,ProSiteProfiles-Munc13-homology domain 1 (MHD1) profile.-PS51258,ProSiteProfiles-Munc13-homology domain 2 (MHD2) profile.-PS51259,SMART-Protein kinase C conserved region 2 (CalB)-SM00239,SUPERFAMILY--SSF49562 compare
mRNA_5222 13590 -1.0 -1.8 Hypothetical Protein compare
mRNA_5216 13584 -1.0 -1.0 K04648 DCTN1 dynactin 1 compare
mRNA_6368 14736 -1.0 -1.3 KOG2049 Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) compare
mRNA_4009 12377 -1.0 -2.3 K10639 CCNB1IP1, HEI10 E3 ubiquitin-protein ligase CCNP1IP1 compare
mRNA_3786 12154 -1.0 -3.5 K00006 GPD1 glycerol-3-phosphate dehydrogenase (NAD+) compare
mRNA_6154 14522 -1.0 -11.9 K16667 PTPRG receptor-type tyrosine-protein phosphatase gamma compare
mRNA_4005 12373 -1.0 -1.6 HMMPfam-bZIP transcription factor-PF00170,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959 compare
mRNA_1596 9964 -0.9 -0.4 K14557 UTP6 U3 small nucleolar RNA-associated protein 6 compare
mRNA_1503 9871 -0.9 -3.7 Hypothetical Protein compare
mRNA_772 9140 -0.9 -2.0 Hypothetical Protein compare
mRNA_1591 9959 -0.9 -4.3 K01835 pgm phosphoglucomutase compare
mRNA_5077 13445 -0.9 -2.2 KOG1663 O-methyltransferase compare
mRNA_1867 10235 -0.9 -2.8 HMMPfam-von Willebrand factor type A domain-PF00092,ProSiteProfiles-VWFA domain profile.-PS50234,SMART-von Willebrand factor (vWF) type A domain-SM00327,SUPERFAMILY--SSF53300 compare
mRNA_1326 9694 -0.9 -3.5 KOG1239 Inner membrane protein translocase involved in respiratory chain assembly compare
mRNA_5552 13920 -0.9 -0.8 K03360 GRR1 F-box and leucine-rich repeat protein GRR1 compare
mRNA_8173 16541 -0.9 -0.7 HMMPfam-Glutathione-dependent formaldehyde-activating enzyme-PF04828,SUPERFAMILY--SSF51316 compare
mRNA_952 9320 -0.9 -1.7 Hypothetical Protein compare
mRNA_1188 9556 -0.9 -1.4 Hypothetical Protein compare
mRNA_3639 12007 -0.9 -1.2 K11204 GCLC glutamate--cysteine ligase catalytic subunit compare
mRNA_1864 10232 -0.9 -1.6 SUPERFAMILY--SSF53300 compare
mRNA_7500 15868 -0.9 -1.7 KOG2062 26S proteasome regulatory complex, subunit RPN2/PSMD1 compare
mRNA_4 8372 -0.9 -1.7 K00772 mtaP, MTAP 5'-methylthioadenosine phosphorylase compare
mRNA_4261 12629 -0.9 -1.9 HMMPfam-NUDIX domain-PF00293,ProSitePatterns-Nudix box signature.-PS00893,ProSiteProfiles-Nudix hydrolase domain profile.-PS51462,SUPERFAMILY--SSF55811 compare
mRNA_7783 16151 -0.9 -3.5 HMMPfam-Mitochondrial carrier protein-PF00153,SUPERFAMILY--SSF103506 compare
mRNA_6712 15080 -0.9 -2.3 Hypothetical Protein compare
mRNA_628 8996 -0.9 -3.6 K17894 GATA2 GATA-binding protein 2 compare
mRNA_3815 12183 -0.9 -1.4 K06631 PLK1 polo-like kinase 1 compare
mRNA_4569 12937 -0.9 -0.8 HMMPfam-Integral peroxisomal membrane peroxin-PF06398 compare
mRNA_3773 12141 -0.9 -3.7 BLAST transmembrane protein, putative [Rhizoctonia solani A... compare
mRNA_4590 12958 -0.9 -2.9 Hypothetical Protein compare
mRNA_928 9296 -0.9 -6.3 Hypothetical Protein compare
mRNA_7178 15546 -0.9 -1.3 KOG0417 Ubiquitin-protein ligase compare
mRNA_7484 15852 -0.8 -4.9 K09565 PPIF peptidyl-prolyl isomerase F (cyclophilin D) compare
mRNA_8199 16567 -0.8 -1.7 Hypothetical Protein compare
mRNA_3834 12202 -0.8 -2.4 Hypothetical Protein compare
mRNA_2647 11015 -0.8 -1.8 Hypothetical Protein compare
mRNA_4289 12657 -0.8 -2.7 K15445 TRMT10A, TRM10, RG9MTD2 tRNA (guanine9-N1)-methyltransferase compare
mRNA_6130 14498 -0.8 -2.6 K11786 STH1_SNF2 ATP-dependent helicase STH1/SNF2 compare
mRNA_4548 12916 -0.8 -3.2 K03392 ACMSD aminocarboxymuconate-semialdehyde decarboxylase compare
mRNA_8316 16684 -0.8 -0.9 KOG2923 Uncharacterized conserved protein compare
mRNA_6152 14520 -0.8 -0.3 HMMPfam-Slx4 endonuclease-PF09494 compare
mRNA_3511 11879 -0.8 -0.7 K10875 RAD54L, RAD54 DNA repair and recombination protein RAD54 and RAD54-like protein compare
mRNA_1022 9390 -0.8 -3.1 KOG1550 Extracellular protein SEL-1 and related proteins compare
mRNA_2540 10908 -0.8 -4.1 SUPERFAMILY--SSF52058 compare
mRNA_7822 16190 -0.8 -1.5 Hypothetical Protein compare
mRNA_1032 9400 -0.8 -1.8 Hypothetical Protein compare
mRNA_5608 13976 -0.8 -2.6 K03018 RPC1, POLR3A DNA-directed RNA polymerase III subunit RPC1 compare
mRNA_3559 11927 -0.8 -2.0 K18622 ADD adducin compare
mRNA_8435 16803 -0.8 -2.5 Hypothetical Protein compare
mRNA_1026 9394 -0.8 -2.2 HMMPfam-Protein of unknown function (DUF3317)-PF11779 compare
mRNA_7858 16226 -0.8 -1.3 K11673 ACTR8, ARP8, INO80N actin-related protein 8 compare
mRNA_224 8592 -0.8 -1.1 K07300 chaA, CAX Ca2+-H+ antiporter compare
mRNA_2560 10928 -0.8 -3.6 Hypothetical Protein compare
mRNA_3631 11999 -0.8 -0.7 Hypothetical Protein compare
mRNA_8177 16545 -0.8 -1.4 Hypothetical Protein compare
mRNA_4054 12422 -0.8 -1.7 KOG2973 Uncharacterized conserved protein compare
mRNA_818 9186 -0.8 -2.3 HMMPfam-PQ loop repeat-PF04193 compare
mRNA_1250 9618 -0.8 -1.2 Hypothetical Protein compare
mRNA_1993 10361 -0.8 -1.1 Hypothetical Protein compare
mRNA_4773 13141 -0.8 -2.6 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_4592 12960 -0.8 -0.6 K11655 BAZ1A, ACF1 bromodomain adjacent to zinc finger domain protein 1A compare
mRNA_7433 15801 -0.8 -0.6 K10356 MYO1 myosin I compare
mRNA_8403 16771 -0.8 -4.0 K08829 MAK male germ cell-associated kinase compare
mRNA_3188 11556 -0.8 -3.1 Hypothetical Protein compare
mRNA_7764 16132 -0.7 -1.5 Hypothetical Protein compare
mRNA_2462 10830 -0.7 -1.1 SUPERFAMILY--SSF52047 compare
mRNA_3854 12222 -0.7 -2.5 Hypothetical Protein compare
mRNA_5644 14012 -0.7 -2.9 Hypothetical Protein compare
mRNA_3051 11419 -0.7 -1.2 Hypothetical Protein compare
mRNA_7116 15484 -0.7 -6.2 K04393 CDC42 cell division control protein 42 compare
mRNA_1554 9922 -0.7 -3.0 KOG1611 Predicted short chain-type dehydrogenase compare
mRNA_3287 11655 -0.7 -1.5 Hypothetical Protein compare
mRNA_6315 14683 -0.7 -2.6 K10609 CUL4 cullin 4 compare
mRNA_4925 13293 -0.7 -2.5 ProSiteProfiles-WW/rsp5/WWP domain profile.-PS50020,SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045 compare
mRNA_5082 13450 -0.7 -1.9 K10696 BRE1 E3 ubiquitin-protein ligase BRE1 compare
mRNA_5442 13810 -0.7 -1.0 HMMPfam-R3H domain-PF01424,HMMPfam-SUZ domain-PF12752,ProSiteProfiles-R3H domain profile.-PS51061,ProSiteProfiles-SUZ domain profile.-PS51673,SUPERFAMILY--SSF82708 compare
mRNA_4641 13009 -0.7 -1.7 KOG1161 Protein involved in vacuolar polyphosphate accumulation, contains SPX domain compare
mRNA_1927 10295 -0.7 -5.5 K19691 NIK1, TCSC osomolarity two-component system, sensor histidine kinase NIK1 compare
mRNA_4910 13278 -0.7 -0.9 K14555 UTP13, TBL3 U3 small nucleolar RNA-associated protein 13 compare
mRNA_5251 13619 -0.7 -0.7 K12867 SYF1, XAB2 pre-mRNA-splicing factor SYF1 compare
mRNA_1480 9848 -0.7 -0.8 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_600 8968 -0.7 -3.5 K17785 IMMT, FCJ1, MNOS2 mitofilin compare
mRNA_7674 16042 -0.7 -1.3 SUPERFAMILY--SSF48371 compare
mRNA_5557 13925 -0.7 -4.4 K09008 NDUFAF3 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 compare
mRNA_4188 12556 -0.7 -2.7 KOG4372 Predicted alpha/beta hydrolase compare
mRNA_6610 14978 -0.7 -1.1 BLAST related to MSL5-branch point bridging protein [Sporis... compare
mRNA_1202 9570 -0.7 -1.6 K11253 H3 histone H3 compare
mRNA_5794 14162 -0.7 -3.4 K01637 E4.1.3.1, aceA isocitrate lyase compare
mRNA_8139 16507 -0.7 -2.6 K01139 spoT, HDDC3 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
mRNA_8246 16614 -0.7 -1.3 Hypothetical Protein compare
mRNA_7516 15884 -0.7 -0.5 HMMPfam-Protoglobin-PF11563 compare
mRNA_3990 12358 -0.7 -2.0 K07561 DPH1, dph2 2-(3-amino-3-carboxypropyl)histidine synthase compare
mRNA_506 8874 -0.7 -3.9 K08793 STK32, YANK serine/threonine kinase 32 compare
mRNA_7678 16046 -0.7 -1.6 K00657 speG diamine N-acetyltransferase compare
mRNA_2949 11317 -0.7 -2.5 K02267 COX6B cytochrome c oxidase subunit 6b compare
mRNA_5966 14334 -0.7 -1.9 KOG1950 Glycosyl transferase, family 8 - glycogenin compare
mRNA_8284 16652 -0.7 -1.5 K07023 K07023 putative hydrolases of HD superfamily compare


Specific Phenotypes

None in this experiment

For Rhodosporidium toruloides IFO0880 in ypd buoyancy experiments

For ypd buoyancy unknown across organisms

Metabolic Maps

Color code by fitness: see overview map or list of maps.