Experiment setABuoy_YPD_All for Rhodosporidium toruloides IFO0880

Compare to:

40 hrs No Buoyancy Separation

200 most detrimental genes:

  gene name fitness t score description  
mRNA_7950 16318 2.4 1.6 K04802 PCNA proliferating cell nuclear antigen compare
mRNA_3354 11722 2.4 2.7 KOG2395 Protein involved in vacuole import and degradation compare
mRNA_5891 14259 2.3 2.9 K11788 ADE5 phosphoribosylamine--glycine ligase / phosphoribosylformylglycinamidine cyclo-ligase compare
mRNA_7912 16280 2.3 1.9 K11434 PRMT1 type I protein arginine methyltransferase compare
mRNA_1582 9950 2.1 1.9 K01381 PEP4 saccharopepsin compare
mRNA_7433 15801 2.0 1.3 K10356 MYO1 myosin I compare
mRNA_7668 16036 1.9 3.9 K18042 STYX serine/threonine/tyrosine-interacting protein compare
mRNA_4328 12696 1.9 2.1 HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383 compare
mRNA_5918 14286 1.9 2.2 K11498 CENPE centromeric protein E compare
mRNA_374 8742 1.8 1.3 Hypothetical Protein compare
mRNA_4527 12895 1.8 3.7 SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735 compare
mRNA_5807 14175 1.8 2.7 HMMPfam-Protein of unknown function (DUF2638)-PF10937 compare
mRNA_5359 13727 1.7 1.7 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_2587 10955 1.7 2.3 K04368 MAP2K1, MEK1 mitogen-activated protein kinase kinase 1 compare
mRNA_5459 13827 1.7 2.7 K11274 WDHD1, CTF4 chromosome transmission fidelity protein 4 compare
mRNA_2548 10916 1.6 3.5 KOG1943 Beta-tubulin folding cofactor D compare
mRNA_7891 16259 1.6 1.9 Hypothetical Protein compare
mRNA_6192 14560 1.6 3.4 Hypothetical Protein compare
mRNA_267 8635 1.6 2.1 K03381 catA catechol 1,2-dioxygenase compare
mRNA_1215 9583 1.6 1.9 Hypothetical Protein compare
mRNA_8135 16503 1.6 2.6 K00804 GGPS1 geranylgeranyl diphosphate synthase, type III compare
mRNA_2879 11247 1.6 1.7 HMMPfam-Protein of unknown function (DUF3237)-PF11578 compare
mRNA_3030 11398 1.6 3.6 Hypothetical Protein compare
mRNA_915 9283 1.6 1.2 K01950 E6.3.5.1, NADSYN1, QNS1, nadE NAD+ synthase (glutamine-hydrolysing) compare
mRNA_5192 13560 1.5 1.7 KOG2814 Transcription coactivator complex, P50 component (LigT RNA ligase/phosphodiesterase family) compare
mRNA_2459 10827 1.5 1.1 KOG2747 Histone acetyltransferase (MYST family) compare
mRNA_6385 14753 1.5 1.2 K03107 SRP68 signal recognition particle subunit SRP68 compare
mRNA_4387 12755 1.5 1.7 HMMPfam-Ctf8-PF09696 compare
mRNA_8213 16581 1.5 0.9 KOG1590 Uncharacterized conserved protein compare
mRNA_7475 15843 1.5 1.4 K08158 MDR1, FLR1, CAF5 MFS transporter, DHA1 family, multidrug resistance protein compare
mRNA_2960 11328 1.5 1.9 KOG2617 Citrate synthase compare
mRNA_2617 10985 1.5 2.8 HMMPfam-Carbonic anhydrase-PF00484,SMART-Carbonic anhydrase-SM00947,SUPERFAMILY--SSF53056 compare
mRNA_5274 13642 1.5 4.5 KOG0032 Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily compare
mRNA_3891 12259 1.5 2.0 K07889 RAB5C Ras-related protein Rab-5C compare
mRNA_1633 10001 1.5 2.4 HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473 compare
mRNA_2515 10883 1.5 1.9 KOG0035 Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) compare
mRNA_3562 11930 1.4 1.3 KOG0017 FOG Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations compare
mRNA_4110 12478 1.4 1.6 BLAST metal resistance protein ycf1 [Trichosporon asahii va... compare
mRNA_8133 16501 1.4 1.5 HMMPfam-Senescence-associated protein-PF06911 compare
mRNA_6212 14580 1.4 1.6 SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045 compare
mRNA_713 9081 1.4 2.4 Hypothetical Protein compare
mRNA_3484 11852 1.4 2.0 Hypothetical Protein compare
mRNA_5921 14289 1.4 2.6 K14789 NOP6 nucleolar protein 6 compare
mRNA_3649 12017 1.4 3.2 HMMPfam-Protein of unknown function, DUF604-PF04646 compare
mRNA_8116 16484 1.4 1.6 K00949 thiN, TPK1, THI80 thiamine pyrophosphokinase compare
mRNA_4642 13010 1.4 2.4 Hypothetical Protein compare
mRNA_858 9226 1.4 0.7 K10599 PRPF19, PRP19 pre-mRNA-processing factor 19 compare
mRNA_5465 13833 1.4 2.5 Hypothetical Protein compare
mRNA_7095 15463 1.4 0.6 Hypothetical Protein compare
mRNA_2449 10817 1.4 2.9 KOG1343 Histone deacetylase complex, catalytic component HDA1 compare
mRNA_1546 9914 1.4 1.7 K18040 PTPN23 tyrosine-protein phosphatase non-receptor type 23 compare
mRNA_4961 13329 1.4 0.3 Hypothetical Protein compare
mRNA_4672 13040 1.4 2.3 K11979 UBR7 E3 ubiquitin-protein ligase UBR7 compare
mRNA_7647 16015 1.3 2.6 KOG2741 Dimeric dihydrodiol dehydrogenase compare
mRNA_68 8436 1.3 3.0 K12599 SKI2, SKIV2L antiviral helicase SKI2 compare
mRNA_5509 13877 1.3 1.7 ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850 compare
mRNA_5442 13810 1.3 2.3 HMMPfam-R3H domain-PF01424,HMMPfam-SUZ domain-PF12752,ProSiteProfiles-R3H domain profile.-PS51061,ProSiteProfiles-SUZ domain profile.-PS51673,SUPERFAMILY--SSF82708 compare
mRNA_1684 10052 1.3 1.9 Hypothetical Protein compare
mRNA_1392 9760 1.3 3.1 HMMPfam-DASH complex subunit Dam1-PF08653 compare
mRNA_1529 9897 1.3 1.7 K12605 CNOT2, NOT2 CCR4-NOT transcription complex subunit 2 compare
mRNA_1319 9687 1.3 0.9 KOG0404 Thioredoxin reductase compare
mRNA_2701 11069 1.3 0.6 HMMPfam-Glycosyltransferase sugar-binding region containing DXD motif-PF04488,SUPERFAMILY--SSF53448 compare
mRNA_4109 12477 1.3 1.3 Hypothetical Protein compare
mRNA_4041 12409 1.3 0.9 HMMPfam-Sds3-like-PF08598 compare
mRNA_1494 9862 1.3 1.7 HMMPfam-Haloacid dehalogenase-like hydrolase-PF13419,SUPERFAMILY--SSF56784 compare
mRNA_6688 15056 1.2 2.3 BLAST Wings apart-like protein [Ceraceosorus bombacis] compare
mRNA_1888 10256 1.2 2.0 HMMPfam-Protein of unknown function (DUF2423)-PF10338 compare
mRNA_4670 13038 1.2 1.2 Hypothetical Protein compare
mRNA_5456 13824 1.2 3.0 K07034 K07034 uncharacterized protein compare
mRNA_2670 11038 1.2 1.1 SUPERFAMILY--SSF52058 compare
mRNA_4270 12638 1.2 1.1 Hypothetical Protein compare
mRNA_5256 13624 1.2 1.6 SUPERFAMILY--SSF53448 compare
mRNA_1618 9986 1.2 1.0 Hypothetical Protein compare
mRNA_235 8603 1.2 2.0 KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases compare
mRNA_4812 13180 1.2 1.9 K15255 PIF1 ATP-dependent DNA helicase PIF1 compare
mRNA_2232 10600 1.2 1.8 Hypothetical Protein compare
mRNA_5756 14124 1.2 2.8 HMMPfam-Myb-like DNA-binding domain-PF00249,ProSiteProfiles-Myb-like domain profile.-PS50090,ProSiteProfiles-Myb-type HTH DNA-binding domain profile.-PS51294,SMART-SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains-SM00717,SUPERFAMILY--SSF46689 compare
mRNA_2219 10587 1.2 3.1 Hypothetical Protein compare
mRNA_3203 11571 1.2 1.2 Hypothetical Protein compare
mRNA_2236 10604 1.2 3.9 KOG3098 Uncharacterized conserved protein compare
mRNA_5667 14035 1.2 3.4 K11233 SSK1 osomolarity two-component system, response regulator SSK1 compare
mRNA_5738 14106 1.2 0.8 SUPERFAMILY--SSF54928 compare
mRNA_6301 14669 1.2 1.7 Hypothetical Protein compare
mRNA_1788 10156 1.2 3.9 K16368 DGK1 diacylglycerol kinase (CTP) compare
mRNA_549 8917 1.1 1.0 K12618 XRN1, SEP1, KEM1 5'-3' exoribonuclease 1 compare
mRNA_6534 14902 1.1 1.0 HMMPfam-Opy2 protein-PF09463 compare
mRNA_4258 12626 1.1 1.7 KOG4044 Mitochondrial associated endoribonuclease MAR1 (isochorismatase superfamily) compare
mRNA_755 9123 1.1 2.2 HMMPfam-Ribosomal protein L9, N-terminal domain-PF01281,SUPERFAMILY--SSF55658 compare
mRNA_2646 11014 1.1 1.1 HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52058 compare
mRNA_3619 11987 1.1 3.5 HMMPfam-X-Pro dipeptidyl-peptidase (S15 family)-PF02129,HMMPfam-X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain-PF08530,SMART-X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain-SM00939,SUPERFAMILY--SSF49785,SUPERFAMILY--SSF53474,TIGRFAM-/NonD hydrolase CocE/NonD family protein-TIGR00976 compare
mRNA_5688 14056 1.1 1.0 K12199 VTA1, LIP5 vacuolar protein sorting-associated protein VTA1 compare
mRNA_5543 13911 1.1 1.6 K15190 MEPCE, BCDIN3 7SK snRNA methylphosphate capping enzyme compare
mRNA_4872 13240 1.1 2.6 Hypothetical Protein compare
mRNA_3986 12354 1.1 2.4 K01439 dapE succinyl-diaminopimelate desuccinylase compare
mRNA_2660 11028 1.1 2.2 Hypothetical Protein compare
mRNA_5847 14215 1.1 1.7 K17780 TIM8 mitochondrial import inner membrane translocase subunit TIM8 compare
mRNA_5284 13652 1.1 3.1 Hypothetical Protein compare
mRNA_3478 11846 1.1 3.3 SUPERFAMILY--SSF56112 compare
mRNA_2358 10726 1.1 0.9 Hypothetical Protein compare
mRNA_4877 13245 1.1 1.6 KOG2533 Permease of the major facilitator superfamily compare
mRNA_5555 13923 1.1 1.5 K19984 EXOC5, SEC10 exocyst complex component 5 compare
mRNA_2957 11325 1.1 3.7 Hypothetical Protein compare
mRNA_6516 14884 1.1 1.2 Hypothetical Protein compare
mRNA_7808 16176 1.1 1.3 K20183 VPS39, VAM6 Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39 compare
mRNA_3623 11991 1.0 2.8 HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928 compare
mRNA_5375 13743 1.0 2.1 Hypothetical Protein compare
mRNA_2338 10706 1.0 1.9 K05545 DUS4 tRNA-dihydrouridine synthase 4 compare
mRNA_6231 14599 1.0 2.3 KOG2358 NifU-like domain-containing proteins compare
mRNA_4851 13219 1.0 3.8 K06679 MAD1 mitotic spindle assembly checkpoint protein MAD1 compare
mRNA_3836 12204 1.0 2.2 Hypothetical Protein compare
mRNA_1299 9667 1.0 0.3 K00600 glyA, SHMT glycine hydroxymethyltransferase compare
mRNA_7392 15760 1.0 1.0 Hypothetical Protein compare
mRNA_3722 12090 1.0 1.7 K11251 H2A histone H2A compare
mRNA_6038 14406 1.0 3.4 Hypothetical Protein compare
mRNA_4498 12866 1.0 1.9 Hypothetical Protein compare
mRNA_7380 15748 1.0 3.0 K01897 ACSL, fadD long-chain acyl-CoA synthetase compare
mRNA_5783 14151 1.0 3.5 KOG4623 Uncharacterized conserved protein compare
mRNA_1936 10304 1.0 2.4 K07424 CYP3A cytochrome P450, family 3, subfamily A compare
mRNA_284 8652 1.0 2.9 K01762 ACS 1-aminocyclopropane-1-carboxylate synthase compare
mRNA_3040 11408 1.0 2.4 K17275 PLS1 plastin-1 compare
mRNA_3501 11869 1.0 2.1 KOG3791 Predicted RNA-binding protein involved in translational regulation compare
mRNA_5737 14105 1.0 1.1 HMMPfam-Arsenite-resistance protein 2-PF04959,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157 compare
mRNA_6608 14976 1.0 2.5 HMMPfam-Yqey-like protein-PF09424,SUPERFAMILY--SSF89095 compare
mRNA_5589 13957 1.0 1.4 HMMPfam-Region in Clathrin and VPS-PF00637,ProSiteProfiles-Clathrin heavy-chain (CHCR) repeat profile.-PS50236,SMART-Clathrin heavy chain repeat homology-SM00299,SUPERFAMILY--SSF48371 compare
mRNA_5944 14312 1.0 3.1 Hypothetical Protein compare
mRNA_2669 11037 1.0 3.0 Hypothetical Protein compare
mRNA_918 9286 1.0 2.8 K10770 ALKBH8 alkylated DNA repair protein alkB homolog 8 compare
mRNA_4319 12687 1.0 2.3 Hypothetical Protein compare
mRNA_6989 15357 1.0 2.0 K11836 USP5_13, UBP14 ubiquitin carboxyl-terminal hydrolase 5/13 compare
mRNA_2072 10440 1.0 0.9 KOG2908 26S proteasome regulatory complex, subunit RPN9/PSMD13 compare
mRNA_2816 11184 1.0 1.9 HMMPfam-linker histone H1 and H5 family-PF00538,ProSiteProfiles-Linker histone H1/H5 globular (H15) domain profile.-PS51504,SMART-Domain in histone families 1 and 5-SM00526,SUPERFAMILY--SSF46785 compare
mRNA_6836 15204 1.0 1.3 Interpro Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family compare
mRNA_7552 15920 1.0 0.8 K11130 NOP10, NOLA3 H/ACA ribonucleoprotein complex subunit 3 compare
mRNA_581 8949 1.0 2.0 Interpro ERCC4 domain 0 compare
mRNA_3114 11482 1.0 2.8 BLAST c6 zinc finger domain containing protein [Diplodia co... compare
mRNA_5501 13869 1.0 2.4 Hypothetical Protein compare
mRNA_5644 14012 1.0 1.8 Hypothetical Protein compare
mRNA_5217 13585 1.0 1.7 Hypothetical Protein compare
mRNA_3733 12101 1.0 3.4 BLAST Hybrid signal transduction histidine kinase B [Leucoa... compare
mRNA_1751 10119 1.0 1.1 KOG2726 Mitochondrial polypeptide chain release factor compare
mRNA_1245 9613 0.9 1.9 HMMPfam-Magnesium transporter NIPA-PF05653,SUPERFAMILY--SSF103481 compare
mRNA_4308 12676 0.9 2.5 HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407 compare
mRNA_7071 15439 0.9 1.6 BLAST histone H3 h3.1 [Schizosaccharomyces japonicus yF... compare
mRNA_6902 15270 0.9 2.0 HMMPfam-Fungal family of unknown function (DUF1776)-PF08643,SUPERFAMILY--SSF51735 compare
mRNA_4515 12883 0.9 1.7 SUPERFAMILY--SSF51735 compare
mRNA_3493 11861 0.9 2.6 K06944 K06944 uncharacterized protein compare
mRNA_322 8690 0.9 1.3 Hypothetical Protein compare
mRNA_3201 11569 0.9 1.6 K12175 GPS1, COPS1, CSN1 COP9 signalosome complex subunit 1 compare
mRNA_4118 12486 0.9 1.6 Hypothetical Protein compare
mRNA_4091 12459 0.9 3.1 K03362 FBXW1_11, BTRC, beta-TRCP F-box and WD-40 domain protein 1/11 compare
mRNA_5604 13972 0.9 2.7 Hypothetical Protein compare
mRNA_2202 10570 0.9 3.7 K00365 uaZ urate oxidase compare
mRNA_8188 16556 0.9 1.0 K05012 CLCN3_4_5 chloride channel 3/4/5 compare
mRNA_4388 12756 0.9 1.3 KOG2084 Predicted histone tail methylase containing SET domain compare
mRNA_5671 14039 0.9 1.8 K11675 IES1 Ino eighty subunit 1 compare
mRNA_2196 10564 0.9 2.0 HMMPfam-Bromodomain associated-PF07524 compare
mRNA_5416 13784 0.9 3.3 K04496 CTBP C-terminal binding protein compare
mRNA_5805 14173 0.9 1.4 HMMPfam-Ion transport protein-PF00520,SUPERFAMILY--SSF81324 compare
mRNA_1508 9876 0.9 2.0 KOG3140 Predicted membrane protein compare
mRNA_1746 10114 0.9 1.1 KOG2897 DNA-binding protein YL1 and related proteins compare
mRNA_1702 10070 0.9 0.7 Hypothetical Protein compare
mRNA_3956 12324 0.9 1.6 KOG1843 Uncharacterized conserved protein compare
mRNA_539 8907 0.9 3.0 HMMPfam-Zinc finger, C2H2 type-PF00096,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157 compare
mRNA_6007 14375 0.9 1.3 Hypothetical Protein compare
mRNA_1843 10211 0.9 4.1 Hypothetical Protein compare
mRNA_3284 11652 0.9 2.3 BLAST something about silencing, SAS, complex subunit 4 [Rh... compare
mRNA_5774 14142 0.9 1.8 K11982 RNF115_126 E3 ubiquitin-protein ligase RNF115/126 compare
mRNA_959 9327 0.9 2.8 Hypothetical Protein compare
mRNA_1470 9838 0.9 2.7 K18592 GGT1_5, CD224 gamma-glutamyltranspeptidase / glutathione hydrolase / leukotriene-C4 hydrolase compare
mRNA_2672 11040 0.9 3.1 K20032 ZDHHC13_17, HIP14 palmitoyltransferase ZDHHC13/17 compare
mRNA_5917 14285 0.9 0.9 Hypothetical Protein compare
mRNA_469 8837 0.9 2.3 KOG1012 Ca2+-dependent lipid-binding protein CLB1/vesicle protein vp115/Granuphilin A, contains C2 domain compare
mRNA_4607 12975 0.9 1.5 BLAST TrfA domain protein, putative [Rhizoctonia solani AG-... compare
mRNA_666 9034 0.9 1.6 ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701 compare
mRNA_5885 14253 0.9 1.0 KOG1424 Predicted GTP-binding protein MMR1 compare
mRNA_7187 15555 0.9 1.2 K00799 GST, gst glutathione S-transferase compare
mRNA_121 8489 0.9 0.7 BLAST Pc20g03530 [Penicillium rubens Wisconsin 54-1255] compare
mRNA_1864 10232 0.9 1.0 SUPERFAMILY--SSF53300 compare
mRNA_3834 12202 0.9 1.6 Hypothetical Protein compare
mRNA_6035 14403 0.9 2.0 Hypothetical Protein compare
mRNA_6500 14868 0.9 1.3 K14416 HBS1 elongation factor 1 alpha-like protein compare
mRNA_5305 13673 0.9 2.3 K14859 SSF1_2 ribosome biogenesis protein SSF1/2 compare
mRNA_4192 12560 0.9 0.8 K04797 pfdA, PFDN5 prefoldin alpha subunit compare
mRNA_942 9310 0.9 2.1 KOG1743 Ferric reductase-like proteins compare
mRNA_5916 14284 0.9 2.6 Hypothetical Protein compare
mRNA_660 9028 0.9 1.5 K13289 CTSA, CPY cathepsin A (carboxypeptidase C) compare
mRNA_1999 10367 0.9 1.6 Hypothetical Protein compare
mRNA_6311 14679 0.9 1.5 K03514 PAPD5_7, TRF4 non-canonical poly(A) RNA polymerase PAPD5/7 compare
mRNA_4608 12976 0.9 2.0 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_7147 15515 0.8 1.8 Hypothetical Protein compare
mRNA_652 9020 0.8 2.0 HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729 compare
mRNA_4187 12555 0.8 2.5 K01897 ACSL, fadD long-chain acyl-CoA synthetase compare
mRNA_5356 13724 0.8 4.6 K07748 E1.1.1.170, NSDHL, ERG26 sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating) compare
mRNA_6376 14744 0.8 2.8 K14811 DBP3 ATP-dependent RNA helicase DBP3 compare
mRNA_5673 14041 0.8 2.0 Hypothetical Protein compare
mRNA_5770 14138 0.8 1.2 K15171 SUPT4H1, SPT4 transcription elongation factor SPT4 compare
mRNA_6649 15017 0.8 0.0 K12580 CNOT3, NOT3 CCR4-NOT transcription complex subunit 3 compare
mRNA_7261 15629 0.8 2.8 SUPERFAMILY--SSF51735 compare
mRNA_2254 10622 0.8 1.5 K17822 DCUN1D1_2 DCN1-like protein 1/2 compare
mRNA_3970 12338 0.8 1.8 Hypothetical Protein compare


Specific Phenotypes

None in this experiment

For Rhodosporidium toruloides IFO0880 in ypd buoyancy experiments

For ypd buoyancy unknown across organisms

Metabolic Maps

Color code by fitness: see overview map or list of maps.