Experiment setABuoy_Top for Rhodosporidium toruloides IFO0880

Compare to:

40 hrs High Buoyancy

200 most important genes:

  gene name fitness t score description  
mRNA_4145 12513 -5.0 -3.9 K00641 metX homoserine O-acetyltransferase compare
mRNA_5827 14195 -3.9 -5.0 K04518 pheA2 prephenate dehydratase compare
mRNA_3934 12302 -3.9 -13.4 K01955 carB, CPA2 carbamoyl-phosphate synthase large subunit compare
mRNA_858 9226 -3.6 -1.3 K10599 PRPF19, PRP19 pre-mRNA-processing factor 19 compare
mRNA_3236 11604 -3.6 -4.5 K01755 argH, ASL argininosuccinate lyase compare
mRNA_7115 15483 -3.6 -8.2 K00297 metF, MTHFR methylenetetrahydrofolate reductase (NADPH) compare
mRNA_876 9244 -3.6 -3.6 K00297 metF, MTHFR methylenetetrahydrofolate reductase (NADPH) compare
mRNA_4929 13297 -3.3 -5.0 K01956 carA, CPA1 carbamoyl-phosphate synthase small subunit compare
mRNA_3601 11969 -3.3 -1.2 K11367 CHD1 chromodomain-helicase-DNA-binding protein 1 compare
mRNA_6488 14856 -3.2 -1.6 K01655 LYS21, LYS20 homocitrate synthase compare
mRNA_8325 16693 -3.1 -1.3 KOG1688 Golgi proteins involved in ER retention (RER) compare
mRNA_5891 14259 -3.0 -2.6 K11788 ADE5 phosphoribosylamine--glycine ligase / phosphoribosylformylglycinamidine cyclo-ligase compare
mRNA_1009 9377 -2.8 -14.2 K12659 ARG56 N-acetyl-gamma-glutamyl-phosphate reductase / acetylglutamate kinase compare
mRNA_4885 13253 -2.7 -2.7 K03105 SRP19 signal recognition particle subunit SRP19 compare
mRNA_6786 15154 -2.7 -1.2 K14784 CMS1 protein CMS1 compare
mRNA_1568 9936 -2.6 -1.1 HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383 compare
mRNA_4961 13329 -2.5 -1.4 Hypothetical Protein compare
mRNA_4934 13302 -2.5 -4.2 K00611 OTC, argF, argI ornithine carbamoyltransferase compare
mRNA_698 9066 -2.4 -2.4 K12188 SNF8, EAP30 ESCRT-II complex subunit VPS22 compare
mRNA_8204 16572 -2.3 -1.2 KOG3289 Uncharacterized conserved protein encoded by sequence overlapping the COX4 gene compare
mRNA_6823 15191 -2.2 -2.1 BLAST TNFR/NGFR cysteine-rich region family protein [Rh... compare
mRNA_5682 14050 -2.1 -0.7 K03349 APC2 anaphase-promoting complex subunit 2 compare
mRNA_5889 14257 -2.1 -0.6 K02977 RP-S27Ae, RPS27A small subunit ribosomal protein S27Ae compare
mRNA_6231 14599 -2.1 -3.2 KOG2358 NifU-like domain-containing proteins compare
mRNA_1946 10314 -2.1 -3.2 KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif compare
mRNA_815 9183 -2.1 -1.3 K04555 UBE2G2, UBC7 ubiquitin-conjugating enzyme E2 G2 compare
mRNA_4041 12409 -2.0 -1.0 HMMPfam-Sds3-like-PF08598 compare
mRNA_3736 12104 -1.9 -2.1 K00573 E2.1.1.77, pcm protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
mRNA_8262 16630 -1.9 -5.0 K01958 PC, pyc pyruvate carboxylase compare
mRNA_6771 15139 -1.9 -0.8 Hypothetical Protein compare
mRNA_623 8991 -1.8 -2.3 KOG3158 HSP90 co-chaperone p23 compare
mRNA_2592 10960 -1.8 -1.2 HMMPfam-Protein of unknown function (DUF1762)-PF08574 compare
mRNA_272 8640 -1.8 -2.1 KOG4178 Soluble epoxide hydrolase compare
mRNA_8440 16808 -1.8 -1.3 Hypothetical Protein compare
mRNA_5550 13918 -1.8 -0.9 K09424 REB1 Myb-like DNA-binding protein REB1 compare
mRNA_8457 16825 -1.8 -3.4 K02728 PSMA4 20S proteasome subunit alpha 3 compare
mRNA_2360 10728 -1.8 -2.0 Hypothetical Protein compare
mRNA_7828 16196 -1.7 -7.2 K01940 argG, ASS1 argininosuccinate synthase compare
mRNA_825 9193 -1.7 -1.2 HMMPfam-Modifier of rudimentary (Mod(r)) protein-PF07200,ProSiteProfiles-VPS37 C-terminal domain profile.-PS51314,SUPERFAMILY--SSF140111 compare
mRNA_3664 12032 -1.7 -1.0 K15111 SLC25A26 solute carrier family 25 (mitochondrial S-adenosylmethionine transporter), member 26 compare
mRNA_4595 12963 -1.7 -0.9 KOG2186 Cell growth-regulating nucleolar protein compare
mRNA_3753 12121 -1.7 -9.5 K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase compare
mRNA_6662 15030 -1.7 -1.1 HMMPfam-G-patch domain-PF01585,HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,ProSiteProfiles-G-patch domain profile.-PS50174,SMART-RNA recognition motif-SM00360,SMART-glycine rich nucleic binding domain-SM00443,SUPERFAMILY--SSF54928 compare
mRNA_1471 9839 -1.7 -0.9 K08874 TRRAP transformation/transcription domain-associated protein compare
mRNA_1589 9957 -1.7 -1.8 Hypothetical Protein compare
mRNA_7855 16223 -1.7 -1.5 K15443 TRM82, WDR4 tRNA (guanine-N(7)-)-methyltransferase subunit TRM82 compare
mRNA_8245 16613 -1.7 -0.9 HMMPfam-Mitochondrial carrier protein-PF00153,ProSiteProfiles-Solute carrier (Solcar) repeat profile.-PS50920,SUPERFAMILY--SSF103506 compare
mRNA_7604 15972 -1.7 -1.5 K09549 PFDN2 prefoldin subunit 2 compare
mRNA_4912 13280 -1.6 -2.1 KOG3309 Ferredoxin compare
mRNA_3639 12007 -1.6 -1.2 K11204 GCLC glutamate--cysteine ligase catalytic subunit compare
mRNA_4899 13267 -1.6 -1.3 KOG4705 Uncharacterized conserved protein compare
mRNA_2232 10600 -1.6 -2.1 Hypothetical Protein compare
mRNA_1396 9764 -1.6 -2.8 Hypothetical Protein compare
mRNA_1457 9825 -1.6 -3.1 K00549 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase compare
mRNA_6876 15244 -1.6 -2.9 Hypothetical Protein compare
mRNA_6020 14388 -1.6 -0.5 SUPERFAMILY--SSF52047 compare
mRNA_1127 9495 -1.6 -3.3 K00143 LYS2 L-aminoadipate-semialdehyde dehydrogenase compare
mRNA_7554 15922 -1.5 -0.6 K07359 CAMKK calcium/calmodulin-dependent protein kinase kinase compare
mRNA_925 9293 -1.5 -1.5 K10704 UBE2V ubiquitin-conjugating enzyme E2 variant compare
mRNA_4874 13242 -1.5 -0.7 KOG2922 Uncharacterized conserved protein compare
mRNA_1518 9886 -1.5 -0.6 K03521 fixA, etfB electron transfer flavoprotein beta subunit compare
mRNA_5363 13731 -1.5 -0.6 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_4263 12631 -1.5 -0.8 K10416 DYNC1LI, DNCLI dynein light intermediate chain 1, cytosolic compare
mRNA_1574 9942 -1.5 -2.0 K06867 K06867 uncharacterized protein compare
mRNA_8214 16582 -1.5 -1.2 BLAST NADH-ubiquinone oxidoreductase 9.5 kDa subunit [R... compare
mRNA_7648 16016 -1.5 -1.1 K01705 LYS4 homoaconitate hydratase compare
mRNA_8199 16567 -1.5 -0.9 Hypothetical Protein compare
mRNA_6777 15145 -1.4 -1.5 Hypothetical Protein compare
mRNA_7571 15939 -1.4 -1.8 K11450 KDM1A, AOF2, LSD1 lysine-specific histone demethylase 1A compare
mRNA_1576 9944 -1.4 -2.6 KOG0737 AAA+-type ATPase compare
mRNA_1615 9983 -1.4 -0.8 K03283 HSPA1_8 heat shock 70kDa protein 1/8 compare
mRNA_2279 10647 -1.4 -4.7 K16369 CHO2 phosphatidylethanolamine N-methyltransferase compare
mRNA_5204 13572 -1.4 -0.8 Hypothetical Protein compare
mRNA_1999 10367 -1.4 -3.4 Hypothetical Protein compare
mRNA_4514 12882 -1.4 -3.2 K03241 EIF2B3 translation initiation factor eIF-2B subunit gamma compare
mRNA_110 8478 -1.4 -3.1 KOG3399 Predicted Yippee-type zinc-binding protein compare
mRNA_1139 9507 -1.4 -2.4 KOG0948 Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily compare
mRNA_7171 15539 -1.3 -4.1 Hypothetical Protein compare
mRNA_914 9282 -1.3 -0.6 K10903 HUS1 HUS1 checkpoint protein compare
mRNA_3511 11879 -1.3 -0.9 K10875 RAD54L, RAD54 DNA repair and recombination protein RAD54 and RAD54-like protein compare
mRNA_5005 13373 -1.3 -1.7 K10956 SEC61A protein transport protein SEC61 subunit alpha compare
mRNA_1606 9974 -1.3 -1.3 Hypothetical Protein compare
mRNA_3839 12207 -1.3 -1.3 BLAST E3 ubiquitin-protein ligase RNF213 [Mus musculus] [Rh... compare
mRNA_7106 15474 -1.3 -1.6 K11313 SUPT3H, SPT3 transcription initiation protein SPT3 compare
mRNA_7869 16237 -1.3 -1.0 KOG4366 Predicted thioesterase compare
mRNA_2811 11179 -1.3 -0.7 Hypothetical Protein compare
mRNA_6198 14566 -1.3 -2.3 BLAST tyrosine kinase domain protein [Rhizoctonia solani AG... compare
mRNA_486 8854 -1.3 -1.5 HMMPfam-Domain of unknown function (DUF202)-PF02656 compare
mRNA_7588 15956 -1.3 -2.2 Hypothetical Protein compare
mRNA_1280 9648 -1.3 -2.3 HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657 compare
mRNA_915 9283 -1.3 -1.0 K01950 E6.3.5.1, NADSYN1, QNS1, nadE NAD+ synthase (glutamine-hydrolysing) compare
mRNA_3716 12084 -1.3 -1.8 K13348 MPV17 protein Mpv17 compare
mRNA_3541 11909 -1.3 -0.9 K01754 E4.3.1.19, ilvA, tdcB threonine dehydratase compare
mRNA_1937 10305 -1.2 -0.4 K18342 OTUD6 OTU domain-containing protein 6 compare
mRNA_8282 16650 -1.2 -1.3 K11359 SPT7 transcriptional activator SPT7 compare
mRNA_2548 10916 -1.2 -3.4 KOG1943 Beta-tubulin folding cofactor D compare
mRNA_2173 10541 -1.2 -1.8 K03950 NDUFA6 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 6 compare
mRNA_3565 11933 -1.2 -5.6 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_2286 10654 -1.2 -2.5 Hypothetical Protein compare
mRNA_1250 9618 -1.2 -1.3 Hypothetical Protein compare
mRNA_118 8486 -1.2 -0.9 HMMPfam-Protein of unknown function (DUF1674)-PF07896 compare
mRNA_7062 15430 -1.2 -1.8 HMMPfam-N-acetyltransferase-PF00797,SUPERFAMILY--SSF54001 compare
mRNA_7080 15448 -1.2 -0.7 K12481 RBSN, ZFYVE20 rabenosyn-5 compare
mRNA_3949 12317 -1.2 -2.9 BLAST transmembrane protein, putative [Rhizoctonia solani A... compare
mRNA_7759 16127 -1.2 -2.4 K11824 AP2A AP-2 complex subunit alpha compare
mRNA_25 8393 -1.2 -2.8 Hypothetical Protein compare
mRNA_7995 16363 -1.2 -1.3 Hypothetical Protein compare
mRNA_6553 14921 -1.2 -4.0 SUPERFAMILY--SSF52266 compare
mRNA_1945 10313 -1.2 -3.3 Hypothetical Protein compare
mRNA_3325 11693 -1.2 -1.5 Hypothetical Protein compare
mRNA_3987 12355 -1.2 -2.1 K08576 CAPN7 calpain-7 compare
mRNA_1032 9400 -1.2 -1.7 Hypothetical Protein compare
mRNA_2200 10568 -1.1 -2.5 K11423 SETD2, SET2 histone-lysine N-methyltransferase SETD2 compare
mRNA_1546 9914 -1.1 -2.7 K18040 PTPN23 tyrosine-protein phosphatase non-receptor type 23 compare
mRNA_3988 12356 -1.1 -0.5 Hypothetical Protein compare
mRNA_1840 10208 -1.1 -1.7 Hypothetical Protein compare
mRNA_688 9056 -1.1 -0.8 Hypothetical Protein compare
mRNA_1934 10302 -1.1 -6.7 HMMPfam-Cryptococcal mannosyltransferase 1-PF11735 compare
mRNA_6862 15230 -1.1 -2.5 KOG0754 Mitochondrial oxodicarboxylate carrier protein compare
mRNA_4022 12390 -1.1 -1.8 KOG2661 Peptidase family M48 compare
mRNA_7739 16107 -1.1 -6.2 K20476 RIC1 RAB6A-GEF complex partner protein 1 compare
mRNA_3254 11622 -1.1 -0.4 K12161 URM1 ubiquitin related modifier 1 compare
mRNA_8316 16684 -1.1 -1.0 KOG2923 Uncharacterized conserved protein compare
mRNA_988 9356 -1.1 -0.8 BLAST glycerol-3-phosphate O-acyltransferase [Sanghuangporu... compare
mRNA_3015 11383 -1.1 -0.2 KOG3252 Uncharacterized conserved protein compare
mRNA_8046 16414 -1.1 -3.6 BLAST myosin tail domain protein [Rhizoctonia solani AG-3 R... compare
mRNA_7851 16219 -1.1 -1.9 KOG0142 Isopentenyl pyrophosphate-dimethylallyl pyrophosphate isomerase compare
mRNA_4642 13010 -1.1 -1.1 Hypothetical Protein compare
mRNA_366 8734 -1.1 -2.0 HMMPfam-Thioredoxin-like-PF13905,SUPERFAMILY--SSF52833 compare
mRNA_6830 15198 -1.1 -3.3 K07893 RAB6A Ras-related protein Rab-6A compare
mRNA_6410 14778 -1.1 -3.0 HMMPfam-Peptidase inhibitor I9-PF05922,SUPERFAMILY--SSF54897 compare
mRNA_5912 14280 -1.1 -1.1 K11375 ELP4 elongator complex protein 4 compare
mRNA_6568 14936 -1.1 -1.2 BLAST Protein IWS1 homolog A [Rhizoctonia solani] compare
mRNA_1732 10100 -1.0 -3.2 Hypothetical Protein compare
mRNA_5275 13643 -1.0 -1.9 K06688 UBE2C, UBC11 ubiquitin-conjugating enzyme E2 C compare
mRNA_4792 13160 -1.0 -3.5 Hypothetical Protein compare
mRNA_5732 14100 -1.0 -2.4 HMMPfam-bZIP transcription factor-PF00170,HMMPfam-Minimal binding motif of Hap4 for binding to Hap2/3/5-PF10297,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,SUPERFAMILY--SSF57959 compare
mRNA_3462 11830 -1.0 -0.4 K17978 NUM1 nuclear migration protein NUM1 compare
mRNA_613 8981 -1.0 -2.4 K10631 TOPORS E3 ubiquitin-protein ligase Topors compare
mRNA_5745 14113 -1.0 -2.2 K11665 INO80, INOC1 DNA helicase INO80 compare
mRNA_2005 10373 -1.0 -1.8 K08286 E2.7.11.- protein-serine/threonine kinase compare
mRNA_4380 12748 -1.0 -3.8 K00550 OPI3 methylene-fatty-acyl-phospholipid synthase compare
mRNA_2701 11069 -1.0 -0.7 HMMPfam-Glycosyltransferase sugar-binding region containing DXD motif-PF04488,SUPERFAMILY--SSF53448 compare
mRNA_7790 16158 -1.0 -1.5 Hypothetical Protein compare
mRNA_6385 14753 -1.0 -0.3 K03107 SRP68 signal recognition particle subunit SRP68 compare
mRNA_6402 14770 -1.0 -1.0 Hypothetical Protein compare
mRNA_6438 14806 -1.0 -2.8 K15456 KTI12 protein KTI12 compare
mRNA_7331 15699 -1.0 -0.4 KOG1666 V-SNARE compare
mRNA_219 8587 -1.0 -3.3 Hypothetical Protein compare
mRNA_3957 12325 -1.0 -2.9 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_7907 16275 -1.0 -7.0 K14951 ATP13A3_4_5 cation-transporting ATPase 13A3/4/5 compare
mRNA_1863 10231 -1.0 -4.1 HMMPfam-Metallo-beta-lactamase superfamily-PF00753,SMART-Metallo-beta-lactamase superfamily-SM00849,SUPERFAMILY--SSF56281 compare
mRNA_5762 14130 -1.0 -2.1 SUPERFAMILY--SSF47095 compare
mRNA_3924 12292 -1.0 -0.2 KOG1993 Nuclear transport receptor KAP120 (importin beta superfamily) compare
mRNA_6401 14769 -1.0 -0.8 HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112 compare
mRNA_5477 13845 -1.0 -0.6 K20179 VPS11, PEP5 vacuolar protein sorting-associated protein 11 compare
mRNA_1217 9585 -1.0 -2.5 K10580 UBE2N, BLU, UBC13 ubiquitin-conjugating enzyme E2 N compare
mRNA_7975 16343 -1.0 -3.4 KOG0762 Mitochondrial carrier protein compare
mRNA_6938 15306 -1.0 -1.3 SUPERFAMILY--SSF56801 compare
mRNA_7223 15591 -1.0 -2.0 K19983 EXOC1, SEC3 exocyst complex component 1 compare
mRNA_8010 16378 -1.0 -0.8 K15414 C1QBP complement component 1 Q subcomponent-binding protein, mitochondrial compare
mRNA_3907 12275 -1.0 -1.1 Hypothetical Protein compare
mRNA_8138 16506 -1.0 -2.3 Hypothetical Protein compare
mRNA_6784 15152 -1.0 -0.9 Hypothetical Protein compare
mRNA_6626 14994 -1.0 -1.8 Hypothetical Protein compare
mRNA_1096 9464 -1.0 -1.0 KOG1611 Predicted short chain-type dehydrogenase compare
mRNA_8216 16584 -1.0 -1.0 K14376 PAP poly(A) polymerase compare
mRNA_4561 12929 -1.0 -2.1 K06990 MEMO1 MEMO1 family protein compare
mRNA_3894 12262 -0.9 -2.2 SUPERFAMILY--SSF54695 compare
mRNA_3885 12253 -0.9 -2.5 K00773 tgt, QTRT1 queuine tRNA-ribosyltransferase compare
mRNA_635 9003 -0.9 -2.3 KOG1470 Phosphatidylinositol transfer protein PDR16 and related proteins compare
mRNA_8351 16719 -0.9 -0.9 K14303 NUP160, NUP120 nuclear pore complex protein Nup160 compare
mRNA_4917 13285 -0.9 -0.6 KOG2920 Predicted methyltransferase compare
mRNA_2797 11165 -0.9 -1.4 HMMPfam-CBP4-PF07960 compare
mRNA_4708 13076 -0.9 -3.2 BLAST expressed protein [Cryptococcus neoformans var. neofo... compare
mRNA_7152 15520 -0.9 -3.1 Hypothetical Protein compare
mRNA_8013 16381 -0.9 -2.9 SUPERFAMILY--SSF58113 compare
mRNA_2771 11139 -0.9 -1.7 KOG4072 Signal peptidase complex, subunit SPC25 compare
mRNA_5996 14364 -0.9 -3.5 BLAST ran GTPase activating protein 1 [Capsaspora owcza... compare
mRNA_5171 13539 -0.9 -3.5 KOG2262 Sexual differentiation process protein ISP4 compare
mRNA_7977 16345 -0.9 -1.8 K17757 CARKD ATP-dependent NAD(P)H-hydrate dehydratase compare
mRNA_4317 12685 -0.9 -1.2 K07025 K07025 putative hydrolase of the HAD superfamily compare
mRNA_6652 15020 -0.9 -0.1 K02975 RP-S25e, RPS25 small subunit ribosomal protein S25e compare
mRNA_6534 14902 -0.9 -0.3 HMMPfam-Opy2 protein-PF09463 compare
mRNA_4101 12469 -0.9 -1.1 Hypothetical Protein compare
mRNA_6905 15273 -0.9 -1.8 K14300 NUP133 nuclear pore complex protein Nup133 compare
mRNA_7915 16283 -0.9 -3.0 SUPERFAMILY--SSF51445 compare
mRNA_260 8628 -0.9 -2.6 KOG2534 DNA polymerase IV (family X) compare
mRNA_5244 13612 -0.9 -2.5 HMMPfam-Glycosyl Hydrolase Family 88-PF07470,SUPERFAMILY--SSF48208 compare
mRNA_4186 12554 -0.9 -1.2 KOG2806 Chitinase compare
mRNA_4094 12462 -0.9 -1.0 KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) compare
mRNA_7416 15784 -0.9 -0.0 Hypothetical Protein compare
mRNA_7829 16197 -0.9 -0.9 K06126 COQ6 ubiquinone biosynthesis monooxygenase Coq6 compare
mRNA_7866 16234 -0.9 -1.1 Hypothetical Protein compare
mRNA_7658 16026 -0.9 -4.1 KOG1398 Uncharacterized conserved protein compare
mRNA_3453 11821 -0.9 -0.4 KOG2959 Transcriptional regulator compare
mRNA_6247 14615 -0.9 -0.5 K01551 arsA, ASNA1 arsenite-transporting ATPase compare
mRNA_4590 12958 -0.9 -1.8 Hypothetical Protein compare
mRNA_2662 11030 -0.9 -2.6 Interpro Bacterial protein of unknown function (HtrL_YibB) compare
mRNA_720 9088 -0.9 -2.7 K00993 EPT1 ethanolaminephosphotransferase compare


Specific Phenotypes

None in this experiment

For Rhodosporidium toruloides IFO0880 in buoyancy on lipid accumulation experiments

For buoyancy on lipid accumulation CN120 across organisms

Metabolic Maps

Color code by fitness: see overview map or list of maps.