Experiment setABuoy_Top for Rhodosporidium toruloides IFO0880

Compare to:

40 hrs High Buoyancy

200 most detrimental genes:

  gene name fitness t score description  
mRNA_1130 9498 3.7 1.8 KOG1773 Stress responsive protein compare
mRNA_7792 16160 3.5 1.5 Hypothetical Protein compare
mRNA_6846 15214 3.2 2.4 K02603 ORC1 origin recognition complex subunit 1 compare
mRNA_5370 13738 3.1 2.8 K18443 GBF1 golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 compare
mRNA_5863 14231 2.9 2.2 K09281 K09281 copper-fist transcription factor compare
mRNA_3383 11751 2.8 1.1 HMMPfam-BSD domain-PF03909,ProSiteProfiles-BSD domain profile.-PS50858,SMART-domain in transcription factors and synapse-associated proteins-SM00751,SUPERFAMILY--SSF140383 compare
mRNA_7229 15597 2.7 0.5 Hypothetical Protein compare
mRNA_4966 13334 2.7 2.0 Hypothetical Protein compare
mRNA_7392 15760 2.6 1.0 Hypothetical Protein compare
mRNA_2462 10830 2.6 2.0 SUPERFAMILY--SSF52047 compare
mRNA_5144 13512 2.6 2.5 BLAST putative mit domain-containing protein [Erysiphe neca... compare
mRNA_5507 13875 2.5 1.5 KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase compare
mRNA_2270 10638 2.5 9.4 K19833 CLA4 serine/threonine-protein kinase CLA4 compare
mRNA_3500 11868 2.5 0.9 KOG2519 5'-3' exonuclease compare
mRNA_2438 10806 2.4 1.6 HMMPfam-Predicted coiled-coil protein (DUF2205)-PF10224 compare
mRNA_2358 10726 2.3 1.3 Hypothetical Protein compare
mRNA_4192 12560 2.3 2.0 K04797 pfdA, PFDN5 prefoldin alpha subunit compare
mRNA_6443 14811 2.3 0.8 K10427 DCTN5 dynactin 5 compare
mRNA_1891 10259 2.2 1.7 K03083 GSK3B glycogen synthase kinase 3 beta compare
mRNA_6369 14737 2.2 4.3 Hypothetical Protein compare
mRNA_3819 12187 2.1 1.8 HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232 compare
mRNA_1007 9375 2.1 2.4 HMMPfam-S1/P1 Nuclease-PF02265,SUPERFAMILY--SSF48537 compare
mRNA_1596 9964 2.0 0.7 K14557 UTP6 U3 small nucleolar RNA-associated protein 6 compare
mRNA_5334 13702 2.0 1.3 K14563 NOP1, FBL rRNA 2'-O-methyltransferase fibrillarin compare
mRNA_8011 16379 2.0 1.0 K09537 DNAJC17 DnaJ homolog subfamily C member 17 compare
mRNA_4693 13061 2.0 1.6 Hypothetical Protein compare
mRNA_7219 15587 1.9 1.0 K15053 CHMP7 charged multivesicular body protein 7 compare
mRNA_4866 13234 1.9 1.1 KOG2881 Predicted membrane protein compare
mRNA_7078 15446 1.9 0.9 Hypothetical Protein compare
mRNA_2647 11015 1.9 1.3 Hypothetical Protein compare
mRNA_562 8930 1.9 0.7 HMMPfam-HPC2 and ubinuclein domain-PF08729 compare
mRNA_1761 10129 1.9 2.4 K07189 PPP1R3 protein phosphatase 1 regulatory subunit 3A/B/C/D/E compare
mRNA_6212 14580 1.9 1.4 SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045 compare
mRNA_6989 15357 1.9 4.6 K11836 USP5_13, UBP14 ubiquitin carboxyl-terminal hydrolase 5/13 compare
mRNA_1684 10052 1.9 1.2 Hypothetical Protein compare
mRNA_3286 11654 1.9 1.0 Hypothetical Protein compare
mRNA_5914 14282 1.8 1.8 HMMPfam-Nuclear protein Es2-PF09751 compare
mRNA_8156 16524 1.8 8.6 BLAST expressed protein [Cryptococcus neoformans var. neofo... compare
mRNA_6182 14550 1.8 5.6 K06665 SSN6 glucose repression mediator protein compare
mRNA_2682 11050 1.7 4.5 K00589 MET1 uroporphyrin-III C-methyltransferase compare
mRNA_4592 12960 1.7 1.2 K11655 BAZ1A, ACF1 bromodomain adjacent to zinc finger domain protein 1A compare
mRNA_6185 14553 1.7 4.3 SUPERFAMILY--SSF69118 compare
mRNA_645 9013 1.7 0.8 KOG3104 Mod5 protein sorting/negative effector of RNA Pol III synthesis compare
mRNA_4349 12717 1.7 1.0 K02873 RP-L13e, RPL13 large subunit ribosomal protein L13e compare
mRNA_2131 10499 1.7 3.3 K09580 PDIA1, P4HB protein disulfide-isomerase A1 compare
mRNA_1686 10054 1.7 1.3 BLAST putative protein [Melanopsichium pennsylvanicum 4] compare
mRNA_1393 9761 1.6 1.1 Hypothetical Protein compare
mRNA_4290 12658 1.6 0.5 Hypothetical Protein compare
mRNA_5071 13439 1.6 9.4 KOG3038 Histone acetyltransferase SAGA associated factor SGF29 compare
mRNA_8289 16657 1.6 7.3 KOG1601 GATA-4/5/6 transcription factors compare
mRNA_6533 14901 1.6 0.9 Hypothetical Protein compare
mRNA_1569 9937 1.6 0.8 KOG3114 Uncharacterized conserved protein compare
mRNA_7818 16186 1.6 1.2 K10865 MRE11 double-strand break repair protein MRE11 compare
mRNA_3232 11600 1.6 1.1 ProSiteProfiles-BRCT domain profile.-PS50172 compare
mRNA_7974 16342 1.5 2.4 Hypothetical Protein compare
mRNA_4001 12369 1.5 1.7 Hypothetical Protein compare
mRNA_109 8477 1.5 1.1 Hypothetical Protein compare
mRNA_5652 14020 1.5 1.4 KOG4443 Putative transcription factor HALR/MLL3, involved in embryonic development compare
mRNA_7796 16164 1.5 1.2 K11322 EPC enhancer of polycomb-like protein compare
mRNA_7568 15936 1.5 0.5 K18753 ZFP36L butyrate response factor 1 compare
mRNA_229 8597 1.5 1.2 Hypothetical Protein compare
mRNA_423 8791 1.5 1.6 KOG4580 Component of vacuolar transporter chaperone (Vtc) involved in vacuole fusion compare
mRNA_3956 12324 1.5 2.4 KOG1843 Uncharacterized conserved protein compare
mRNA_5826 14194 1.5 2.1 SUPERFAMILY--SSF52047 compare
mRNA_2459 10827 1.5 0.5 KOG2747 Histone acetyltransferase (MYST family) compare
mRNA_7044 15412 1.4 6.8 KOG4299 PHD Zn-finger protein compare
mRNA_6411 14779 1.4 1.1 BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M... compare
mRNA_6220 14588 1.4 1.3 Hypothetical Protein compare
mRNA_8230 16598 1.4 6.5 K09668 LARGE glycosyltransferase-like protein LARGE compare
mRNA_3848 12216 1.4 3.6 KOG1817 Ribonuclease compare
mRNA_1965 10333 1.4 3.5 K11422 SETD1, SET1 histone-lysine N-methyltransferase SETD1 compare
mRNA_7572 15940 1.4 0.6 Hypothetical Protein compare
mRNA_5765 14133 1.4 3.6 Interpro Promethin compare
mRNA_2782 11150 1.4 2.7 HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232 compare
mRNA_1618 9986 1.3 1.2 Hypothetical Protein compare
mRNA_2412 10780 1.3 5.7 K04378 SRF serum response factor compare
mRNA_6775 15143 1.3 0.7 K14784 CMS1 protein CMS1 compare
mRNA_5770 14138 1.3 2.5 K15171 SUPT4H1, SPT4 transcription elongation factor SPT4 compare
mRNA_5930 14298 1.3 1.3 Hypothetical Protein compare
mRNA_376 8744 1.3 5.9 K00381 cysI sulfite reductase (NADPH) hemoprotein beta-component compare
mRNA_6560 14928 1.3 1.5 Hypothetical Protein compare
mRNA_4925 13293 1.3 3.7 ProSiteProfiles-WW/rsp5/WWP domain profile.-PS50020,SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045 compare
mRNA_5354 13722 1.3 -0.4 KOG0557 Dihydrolipoamide acetyltransferase compare
mRNA_3364 11732 1.3 2.0 K15423 PPP4C serine/threonine-protein phosphatase 4 catalytic subunit compare
mRNA_916 9284 1.3 3.4 HMMPfam-Activator of mitotic machinery Cdc14 phosphatase activation C-term-PF08632 compare
mRNA_1864 10232 1.3 0.6 SUPERFAMILY--SSF53300 compare
mRNA_5918 14286 1.3 1.3 K11498 CENPE centromeric protein E compare
mRNA_1134 9502 1.3 1.4 K10685 UBLE1B, SAE2, UBA2 ubiquitin-like 1-activating enzyme E1 B compare
mRNA_3687 12055 1.3 1.5 K14837 NOP12 nucleolar protein 12 compare
mRNA_1697 10065 1.3 3.1 BLAST Pro41 protein, putative [Rhizoctonia solani AG-3 Rhs1AP] compare
mRNA_1253 9621 1.3 2.9 K04554 UBE2J2, NCUBE2, UBC6 ubiquitin-conjugating enzyme E2 J2 compare
mRNA_7063 15431 1.3 1.5 Hypothetical Protein compare
mRNA_6819 15187 1.3 5.1 SUPERFAMILY--SSF103107 compare
mRNA_121 8489 1.3 0.9 BLAST Pc20g03530 [Penicillium rubens Wisconsin 54-1255] compare
mRNA_8281 16649 1.3 2.0 Hypothetical Protein compare
mRNA_7921 16289 1.2 0.4 KOG3022 Predicted ATPase, nucleotide-binding compare
mRNA_7116 15484 1.2 5.5 K04393 CDC42 cell division control protein 42 compare
mRNA_5421 13789 1.2 1.6 Interpro Domain of unknown function (DUF5102) 0 compare
mRNA_578 8946 1.2 1.0 K05687 PARK7 protein DJ-1 compare
mRNA_3585 11953 1.2 0.8 KOG1339 Aspartyl protease compare
mRNA_4328 12696 1.2 1.7 HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383 compare
mRNA_4392 12760 1.2 1.1 KOG3069 Peroxisomal NUDIX hydrolase compare
mRNA_4520 12888 1.2 -0.5 Hypothetical Protein compare
mRNA_8018 16386 1.2 1.6 Hypothetical Protein compare
mRNA_4299 12667 1.2 0.5 K12617 PATL1, PAT1 DNA topoisomerase 2-associated protein PAT1 compare
mRNA_2707 11075 1.2 6.1 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_7369 15737 1.2 0.4 KOG1203 Predicted dehydrogenase compare
mRNA_6485 14853 1.2 2.6 K00826 E2.6.1.42, ilvE branched-chain amino acid aminotransferase compare
mRNA_4493 12861 1.2 2.6 SUPERFAMILY--SSF52047 compare
mRNA_557 8925 1.2 2.2 HMMPfam-Ras association (RalGDS/AF-6) domain-PF00788,ProSiteProfiles-Ras-associating (RA) domain profile.-PS50200,SMART-Ras association (RalGDS/AF-6) domain-SM00314,SUPERFAMILY--SSF54236 compare
mRNA_3657 12025 1.2 0.9 Hypothetical Protein compare
mRNA_7823 16191 1.2 0.9 K03011 RPB3, POLR2C DNA-directed RNA polymerase II subunit RPB3 compare
mRNA_7419 15787 1.2 0.9 Hypothetical Protein compare
mRNA_3815 12183 1.2 1.0 K06631 PLK1 polo-like kinase 1 compare
mRNA_4978 13346 1.2 4.0 K12883 NCBP2, CBP20 nuclear cap-binding protein subunit 2 compare
mRNA_6880 15248 1.2 3.9 K00641 metX homoserine O-acetyltransferase compare
mRNA_7519 15887 1.2 0.7 HMMPfam-Protoglobin-PF11563 compare
mRNA_7950 16318 1.2 1.1 K04802 PCNA proliferating cell nuclear antigen compare
mRNA_5378 13746 1.1 2.9 Hypothetical Protein compare
mRNA_1205 9573 1.1 4.0 Hypothetical Protein compare
mRNA_3905 12273 1.1 3.1 KOG0118 FOG RRM domain compare
mRNA_341 8709 1.1 6.3 K00860 cysC adenylylsulfate kinase compare
mRNA_8467 16835 1.1 1.7 Hypothetical Protein compare
mRNA_5075 13443 1.1 6.3 K00958 sat, met3 sulfate adenylyltransferase compare
mRNA_1314 9682 1.1 1.7 BLAST carboxymethylenebutenolidase [Rhizoctonia solani AG-1... compare
mRNA_7125 15493 1.1 3.1 K11315 TADA3, ADA3, NGG1 transcriptional adapter 3 compare
mRNA_1245 9613 1.1 2.7 HMMPfam-Magnesium transporter NIPA-PF05653,SUPERFAMILY--SSF103481 compare
mRNA_407 8775 1.1 1.9 Hypothetical Protein compare
mRNA_6649 15017 1.1 0.4 K12580 CNOT3, NOT3 CCR4-NOT transcription complex subunit 3 compare
mRNA_5536 13904 1.1 0.7 Hypothetical Protein compare
mRNA_2904 11272 1.1 4.6 K03847 ALG12 alpha-1,6-mannosyltransferase compare
mRNA_1286 9654 1.1 2.8 HMMPfam-short chain dehydrogenase-PF00106,SUPERFAMILY--SSF51735 compare
mRNA_4671 13039 1.1 1.6 Hypothetical Protein compare
mRNA_6138 14506 1.1 1.3 Hypothetical Protein compare
mRNA_6903 15271 1.1 3.0 Hypothetical Protein compare
mRNA_8228 16596 1.1 3.8 K11648 SMARCB1, SNF5, INI1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 compare
mRNA_7597 15965 1.1 1.7 Hypothetical Protein compare
mRNA_182 8550 1.1 0.8 K19828 MTG1 mitochondrial GTPase 1 compare
mRNA_8205 16573 1.1 0.4 K11339 MORF4L1, MRG15, EAF3 mortality factor 4-like protein 1 compare
mRNA_2430 10798 1.1 6.2 K09467 MIG zinc-finger protein CreA/MIG compare
mRNA_7773 16141 1.1 2.3 K12857 SNRNP40, PRP8BP Prp8 binding protein compare
mRNA_1214 9582 1.1 1.1 Hypothetical Protein compare
mRNA_7948 16316 1.1 -0.1 HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232 compare
mRNA_2577 10945 1.1 2.2 HMMPfam-Protein of unknown function (DUF3767)-PF12597 compare
mRNA_921 9289 1.1 1.6 KOG1485 Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) compare
mRNA_4801 13169 1.1 0.7 HMMPfam-Uncharacterized alpha/beta hydrolase domain (DUF2235)-PF09994 compare
mRNA_573 8941 1.1 2.1 BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ... compare
mRNA_7085 15453 1.1 2.1 HMMPfam-TRF2-interacting telomeric protein/Rap1 - C terminal domain-PF11626,SUPERFAMILY--SSF46689 compare
mRNA_4364 12732 1.1 2.1 SUPERFAMILY--SSF48371 compare
mRNA_6027 14395 1.1 0.9 HMMPfam-Cysteine-rich secretory protein family-PF00188,PRINTS-Allergen V5/Tpx-1 family signature-PR00837,SMART-SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains.-SM00198,SUPERFAMILY--SSF55797 compare
mRNA_3269 11637 1.1 2.5 Hypothetical Protein compare
mRNA_6268 14636 1.1 0.7 HMMPfam-Survival motor neuron protein (SMN)-PF06003 compare
mRNA_7901 16269 1.1 1.3 KOG1605 TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) compare
mRNA_5626 13994 1.0 1.8 KOG1611 Predicted short chain-type dehydrogenase compare
mRNA_7522 15890 1.0 4.4 HMMPfam-Helix-loop-helix DNA-binding domain-PF00010,ProSiteProfiles-Myc-type, basic helix-loop-helix (bHLH) domain profile.-PS50888,SMART-helix loop helix domain-SM00353,SUPERFAMILY--SSF47459 compare
mRNA_8453 16821 1.0 2.3 Hypothetical Protein compare
mRNA_386 8754 1.0 2.0 Hypothetical Protein compare
mRNA_4564 12932 1.0 4.0 K11844 USP16_45 ubiquitin carboxyl-terminal hydrolase 16/45 compare
mRNA_7087 15455 1.0 1.3 Hypothetical Protein compare
mRNA_6958 15326 1.0 3.4 K09238 ACE2 metallothionein expression activator compare
mRNA_1000 9368 1.0 3.8 BLAST glycosyltransferase 2 [Moniliophthora roreri MCA ... compare
mRNA_1034 9402 1.0 1.5 SMART-N-terminal domain of CBF1 interacting co-repressor CIR-SM01083 compare
mRNA_5141 13509 1.0 3.8 K12198 CHMP5, VPS60 charged multivesicular body protein 5 compare
mRNA_285 8653 1.0 1.3 Hypothetical Protein compare
mRNA_6123 14491 1.0 0.6 BLAST DNA polymerase [Rhizoctonia solani] compare
mRNA_7668 16036 1.0 2.1 K18042 STYX serine/threonine/tyrosine-interacting protein compare
mRNA_5251 13619 1.0 0.5 K12867 SYF1, XAB2 pre-mRNA-splicing factor SYF1 compare
mRNA_6447 14815 1.0 1.5 Hypothetical Protein compare
mRNA_1261 9629 1.0 0.5 K04712 DEGS sphingolipid Delta-4 desaturase compare
mRNA_2003 10371 1.0 5.7 KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif compare
mRNA_5067 13435 1.0 1.1 Hypothetical Protein compare
mRNA_1876 10244 1.0 0.4 Hypothetical Protein compare
mRNA_4730 13098 1.0 1.5 K06062 PCAF, KAT2, GCN5 histone acetyltransferase compare
mRNA_2230 10598 1.0 1.2 HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SMART-Serine/Threonine protein kinases, catalytic domain-SM00220,SUPERFAMILY--SSF56112 compare
mRNA_1215 9583 1.0 1.0 Hypothetical Protein compare
mRNA_2073 10441 1.0 2.1 Hypothetical Protein compare
mRNA_3917 12285 1.0 2.2 KOG4479 Transcription factor e(y)2 compare
mRNA_4569 12937 1.0 0.9 HMMPfam-Integral peroxisomal membrane peroxin-PF06398 compare
mRNA_4079 12447 1.0 9.1 KOG2518 5'-3' exonuclease compare
mRNA_885 9253 1.0 7.8 K10590 TRIP12 E3 ubiquitin-protein ligase TRIP12 compare
mRNA_5082 13450 1.0 1.2 K10696 BRE1 E3 ubiquitin-protein ligase BRE1 compare
mRNA_7343 15711 1.0 1.6 K04798 pfdB, PFDN6 prefoldin beta subunit compare
mRNA_2111 10479 1.0 0.5 K10575 UBE2G1, UBC7 ubiquitin-conjugating enzyme E2 G1 compare
mRNA_3663 12031 1.0 3.6 K01738 cysK cysteine synthase A compare
mRNA_4060 12428 1.0 2.7 K01537 E3.6.3.8 Ca2+-transporting ATPase compare
mRNA_2688 11056 1.0 1.9 Hypothetical Protein compare
mRNA_6532 14900 1.0 1.7 K11352 NDUFA12 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 12 compare
mRNA_803 9171 1.0 1.0 HMMPfam-Velvet factor-PF11754 compare
mRNA_2441 10809 1.0 2.2 KOG1284 Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase compare
mRNA_327 8695 1.0 0.9 KOG0378 40S ribosomal protein S4 compare
mRNA_1767 10135 1.0 3.4 HMMPfam-F-box-like-PF12937 compare
mRNA_4051 12419 1.0 1.0 HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685 compare
mRNA_8242 16610 1.0 0.8 KOG3319 Predicted membrane protein compare
mRNA_5705 14073 1.0 2.2 HMMPfam-Cysteine-rich secretory protein family-PF00188,SUPERFAMILY--SSF55797 compare
mRNA_4938 13306 1.0 1.2 HMMPfam-Protein of unknown function (DUF1749)-PF08538,SUPERFAMILY--SSF53474 compare
mRNA_2918 11286 1.0 2.6 HMMPfam-Acetyltransferase (GNAT) domain-PF13523,SMART-Siderophore biosynthesis protein domain-SM01006,SUPERFAMILY--SSF55729 compare
mRNA_4005 12373 1.0 1.0 HMMPfam-bZIP transcription factor-PF00170,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959 compare
mRNA_516 8884 0.9 0.8 K04482 RAD51 DNA repair protein RAD51 compare
mRNA_2599 10967 0.9 0.9 KOG2619 Fucosyltransferase compare
mRNA_2299 10667 0.9 2.9 Hypothetical Protein compare


Specific Phenotypes

None in this experiment

For Rhodosporidium toruloides IFO0880 in buoyancy on lipid accumulation experiments

For buoyancy on lipid accumulation CN120 across organisms

Metabolic Maps

Color code by fitness: see overview map or list of maps.