Experiment setABuoy_Med for Rhodosporidium toruloides IFO0880

Compare to:

40 hrs Median Buoyancy

200 most detrimental genes:

  gene name fitness t score description  
mRNA_4966 13334 3.6 3.3 Hypothetical Protein compare
mRNA_3383 11751 3.4 1.7 HMMPfam-BSD domain-PF03909,ProSiteProfiles-BSD domain profile.-PS50858,SMART-domain in transcription factors and synapse-associated proteins-SM00751,SUPERFAMILY--SSF140383 compare
mRNA_5863 14231 3.2 2.8 K09281 K09281 copper-fist transcription factor compare
mRNA_7392 15760 3.0 1.5 Hypothetical Protein compare
mRNA_4693 13061 2.9 2.8 Hypothetical Protein compare
mRNA_2647 11015 2.9 1.7 Hypothetical Protein compare
mRNA_1130 9498 2.8 1.2 KOG1773 Stress responsive protein compare
mRNA_7219 15587 2.7 1.8 K15053 CHMP7 charged multivesicular body protein 7 compare
mRNA_3500 11868 2.7 1.0 KOG2519 5'-3' exonuclease compare
mRNA_7229 15597 2.2 0.6 Hypothetical Protein compare
mRNA_5077 13445 2.2 1.0 KOG1663 O-methyltransferase compare
mRNA_5370 13738 2.2 1.9 K18443 GBF1 golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 compare
mRNA_6212 14580 2.1 1.5 SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045 compare
mRNA_6846 15214 2.1 1.5 K02603 ORC1 origin recognition complex subunit 1 compare
mRNA_5144 13512 2.0 2.0 BLAST putative mit domain-containing protein [Erysiphe neca... compare
mRNA_7792 16160 2.0 1.1 Hypothetical Protein compare
mRNA_645 9013 1.9 1.2 KOG3104 Mod5 protein sorting/negative effector of RNA Pol III synthesis compare
mRNA_7453 15821 1.9 1.3 K14407 CSTF2, RNA15 cleavage stimulation factor subunit 2 compare
mRNA_157 8525 1.9 4.4 KOG3066 Translin-associated protein X compare
mRNA_7921 16289 1.9 0.9 KOG3022 Predicted ATPase, nucleotide-binding compare
mRNA_5507 13875 1.9 1.1 KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase compare
mRNA_3286 11654 1.9 1.0 Hypothetical Protein compare
mRNA_8011 16379 1.9 1.0 K09537 DNAJC17 DnaJ homolog subfamily C member 17 compare
mRNA_1261 9629 1.9 1.5 K04712 DEGS sphingolipid Delta-4 desaturase compare
mRNA_2358 10726 1.9 1.1 Hypothetical Protein compare
mRNA_7666 16034 1.8 1.2 K20184 VPS41 vacuolar protein sorting-associated protein 41 compare
mRNA_4592 12960 1.8 1.2 K11655 BAZ1A, ACF1 bromodomain adjacent to zinc finger domain protein 1A compare
mRNA_1864 10232 1.8 1.4 SUPERFAMILY--SSF53300 compare
mRNA_1761 10129 1.8 2.2 K07189 PPP1R3 protein phosphatase 1 regulatory subunit 3A/B/C/D/E compare
mRNA_1684 10052 1.8 1.4 Hypothetical Protein compare
mRNA_3354 11722 1.8 2.0 KOG2395 Protein involved in vacuole import and degradation compare
mRNA_4686 13054 1.7 2.2 HMMPfam-COMPASS (Complex proteins associated with Set1p) component shg1-PF05205 compare
mRNA_5334 13702 1.7 1.1 K14563 NOP1, FBL rRNA 2'-O-methyltransferase fibrillarin compare
mRNA_7823 16191 1.7 1.3 K03011 RPB3, POLR2C DNA-directed RNA polymerase II subunit RPB3 compare
mRNA_7078 15446 1.7 0.8 Hypothetical Protein compare
mRNA_2459 10827 1.7 1.1 KOG2747 Histone acetyltransferase (MYST family) compare
mRNA_4654 13022 1.7 0.6 KOG4253 Tryptophan-rich basic nuclear protein compare
mRNA_7369 15737 1.7 1.0 KOG1203 Predicted dehydrogenase compare
mRNA_1007 9375 1.6 2.3 HMMPfam-S1/P1 Nuclease-PF02265,SUPERFAMILY--SSF48537 compare
mRNA_5080 13448 1.6 3.4 K12486 SMAP stromal membrane-associated protein compare
mRNA_6027 14395 1.6 1.8 HMMPfam-Cysteine-rich secretory protein family-PF00188,PRINTS-Allergen V5/Tpx-1 family signature-PR00837,SMART-SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains.-SM00198,SUPERFAMILY--SSF55797 compare
mRNA_8205 16573 1.6 1.5 K11339 MORF4L1, MRG15, EAF3 mortality factor 4-like protein 1 compare
mRNA_1569 9937 1.6 1.0 KOG3114 Uncharacterized conserved protein compare
mRNA_6443 14811 1.6 0.6 K10427 DCTN5 dynactin 5 compare
mRNA_7419 15787 1.5 1.2 Hypothetical Protein compare
mRNA_1214 9582 1.5 1.7 Hypothetical Protein compare
mRNA_578 8946 1.5 1.3 K05687 PARK7 protein DJ-1 compare
mRNA_8453 16821 1.5 4.2 Hypothetical Protein compare
mRNA_4866 13234 1.5 1.0 KOG2881 Predicted membrane protein compare
mRNA_961 9329 1.5 2.1 Hypothetical Protein compare
mRNA_5543 13911 1.5 1.3 K15190 MEPCE, BCDIN3 7SK snRNA methylphosphate capping enzyme compare
mRNA_8376 16744 1.5 1.3 Hypothetical Protein compare
mRNA_1618 9986 1.5 1.5 Hypothetical Protein compare
mRNA_3848 12216 1.5 3.6 KOG1817 Ribonuclease compare
mRNA_7714 16082 1.4 2.1 Hypothetical Protein compare
mRNA_6560 14928 1.4 1.9 Hypothetical Protein compare
mRNA_1393 9761 1.4 1.1 Hypothetical Protein compare
mRNA_8242 16610 1.4 1.6 KOG3319 Predicted membrane protein compare
mRNA_5571 13939 1.4 1.9 K14546 UTP5, WDR43 U3 small nucleolar RNA-associated protein 5 compare
mRNA_549 8917 1.4 1.4 K12618 XRN1, SEP1, KEM1 5'-3' exoribonuclease 1 compare
mRNA_5929 14297 1.4 1.4 Hypothetical Protein compare
mRNA_1993 10361 1.3 1.4 Hypothetical Protein compare
mRNA_3956 12324 1.3 2.3 KOG1843 Uncharacterized conserved protein compare
mRNA_7568 15936 1.3 0.5 K18753 ZFP36L butyrate response factor 1 compare
mRNA_229 8597 1.3 1.2 Hypothetical Protein compare
mRNA_4538 12906 1.3 2.4 KOG2112 Lysophospholipase compare
mRNA_7948 16316 1.3 0.5 HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232 compare
mRNA_1596 9964 1.3 0.5 K14557 UTP6 U3 small nucleolar RNA-associated protein 6 compare
mRNA_702 9070 1.3 1.8 BLAST RAN guanine nucleotide release factor [Moesziomyces a... compare
mRNA_5713 14081 1.3 0.9 K18819 GOLS inositol 3-alpha-galactosyltransferase compare
mRNA_4392 12760 1.3 1.5 KOG3069 Peroxisomal NUDIX hydrolase compare
mRNA_4925 13293 1.3 3.7 ProSiteProfiles-WW/rsp5/WWP domain profile.-PS50020,SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045 compare
mRNA_5930 14298 1.3 1.5 Hypothetical Protein compare
mRNA_8307 16675 1.3 2.2 Hypothetical Protein compare
mRNA_4801 13169 1.3 0.9 HMMPfam-Uncharacterized alpha/beta hydrolase domain (DUF2235)-PF09994 compare
mRNA_8289 16657 1.2 5.8 KOG1601 GATA-4/5/6 transcription factors compare
mRNA_4730 13098 1.2 2.5 K06062 PCAF, KAT2, GCN5 histone acetyltransferase compare
mRNA_2111 10479 1.2 0.8 K10575 UBE2G1, UBC7 ubiquitin-conjugating enzyme E2 G1 compare
mRNA_5626 13994 1.2 2.2 KOG1611 Predicted short chain-type dehydrogenase compare
mRNA_5826 14194 1.2 1.9 SUPERFAMILY--SSF52047 compare
mRNA_556 8924 1.2 3.1 HMMPfam-Acetyltransferase (GNAT) domain-PF13302,SUPERFAMILY--SSF55729 compare
mRNA_1808 10176 1.2 3.4 Hypothetical Protein compare
mRNA_4498 12866 1.2 2.0 Hypothetical Protein compare
mRNA_5725 14093 1.2 0.4 K03234 EEF2 elongation factor 2 compare
mRNA_1697 10065 1.2 3.9 BLAST Pro41 protein, putative [Rhizoctonia solani AG-3 Rhs1AP] compare
mRNA_3819 12187 1.2 1.1 HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232 compare
mRNA_2352 10720 1.2 1.5 K02903 RP-L28e, RPL28 large subunit ribosomal protein L28e compare
mRNA_7818 16186 1.2 0.8 K10865 MRE11 double-strand break repair protein MRE11 compare
mRNA_1301 9669 1.2 0.8 K06947 GRC3, NOL9 polynucleotide 5'-hydroxyl-kinase GRC3/NOL9 compare
mRNA_936 9304 1.2 3.1 K10365 CAPZB capping protein (actin filament) muscle Z-line, beta compare
mRNA_1876 10244 1.2 0.2 Hypothetical Protein compare
mRNA_967 9335 1.2 1.5 HMMPfam-Starch binding domain-PF00686,SUPERFAMILY--SSF49452 compare
mRNA_8137 16505 1.2 0.7 K00586 DPH5 diphthine methyl ester synthase compare
mRNA_5934 14302 1.2 1.5 HMMPfam-Mitochondrial carrier protein-PF00153,ProSiteProfiles-Solute carrier (Solcar) repeat profile.-PS50920,SUPERFAMILY--SSF103506 compare
mRNA_6130 14498 1.2 1.8 K11786 STH1_SNF2 ATP-dependent helicase STH1/SNF2 compare
mRNA_4290 12658 1.2 0.4 Hypothetical Protein compare
mRNA_3822 12190 1.2 1.8 HMMPfam-Protein of unknown function (DUF2781)-PF10914,PIRSF--PIRSF031032 compare
mRNA_2495 10863 1.2 3.4 K03507 DPB11 DNA replication regulator DPB11 compare
mRNA_6457 14825 1.1 1.4 Hypothetical Protein compare
mRNA_3657 12025 1.1 0.9 Hypothetical Protein compare
mRNA_978 9346 1.1 1.2 Hypothetical Protein compare
mRNA_2660 11028 1.1 3.2 Hypothetical Protein compare
mRNA_5496 13864 1.1 1.1 HMMPfam-HSF-type DNA-binding-PF00447,SUPERFAMILY--SSF46785 compare
mRNA_7737 16105 1.1 1.6 HMMPfam-Antibiotic biosynthesis monooxygenase-PF03992,SUPERFAMILY--SSF54909 compare
mRNA_7974 16342 1.1 1.6 Hypothetical Protein compare
mRNA_1243 9611 1.1 1.9 K02493 hemK, prmC, HEMK release factor glutamine methyltransferase compare
mRNA_5868 14236 1.1 1.6 HMMPfam-2OG-Fe(II) oxygenase superfamily-PF03171,HMMPfam-non-haem dioxygenase in morphine synthesis N-terminal-PF14226,PRINTS-Isopenicillin N synthase signature-PR00682,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SUPERFAMILY--SSF51197 compare
mRNA_4569 12937 1.1 1.1 HMMPfam-Integral peroxisomal membrane peroxin-PF06398 compare
mRNA_7095 15463 1.1 0.9 Hypothetical Protein compare
mRNA_1976 10344 1.1 0.7 Hypothetical Protein compare
mRNA_4065 12433 1.1 1.5 KOG1198 Zinc-binding oxidoreductase compare
mRNA_3520 11888 1.1 0.7 BLAST mannose-6-phosphate isomerase, class I [Kwoniella... compare
mRNA_2661 11029 1.1 3.3 Interpro GDP-fucose protein O-fucosyltransferase compare
mRNA_2551 10919 1.1 1.1 K00799 GST, gst glutathione S-transferase compare
mRNA_8018 16386 1.1 1.7 Hypothetical Protein compare
mRNA_7519 15887 1.1 0.8 HMMPfam-Protoglobin-PF11563 compare
mRNA_3699 12067 1.1 2.9 KOG0870 DNA polymerase epsilon, subunit D compare
mRNA_4644 13012 1.1 1.0 Hypothetical Protein compare
mRNA_6371 14739 1.1 2.3 HMMPfam-SET domain-PF00856,ProSiteProfiles-SET domain profile.-PS50280,SUPERFAMILY--SSF82199 compare
mRNA_3687 12055 1.1 1.0 K14837 NOP12 nucleolar protein 12 compare
mRNA_8248 16616 1.1 2.7 KOG2945 Predicted RNA-binding protein compare
mRNA_34 8402 1.1 0.7 BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ... compare
mRNA_2230 10598 1.1 1.4 HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SMART-Serine/Threonine protein kinases, catalytic domain-SM00220,SUPERFAMILY--SSF56112 compare
mRNA_6872 15240 1.0 1.3 KOG3035 Isoamyl acetate-hydrolyzing esterase compare
mRNA_5421 13789 1.0 1.6 Interpro Domain of unknown function (DUF5102) 0 compare
mRNA_6411 14779 1.0 0.6 BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M... compare
mRNA_4349 12717 1.0 0.6 K02873 RP-L13e, RPL13 large subunit ribosomal protein L13e compare
mRNA_273 8641 1.0 3.4 K15174 PAF1 RNA polymerase II-associated factor 1 compare
mRNA_8081 16449 1.0 1.7 K00905 BCKDK [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] kinase compare
mRNA_516 8884 1.0 1.0 K04482 RAD51 DNA repair protein RAD51 compare
mRNA_1253 9621 1.0 2.6 K04554 UBE2J2, NCUBE2, UBC6 ubiquitin-conjugating enzyme E2 J2 compare
mRNA_7667 16035 1.0 1.7 Hypothetical Protein compare
mRNA_3312 11680 1.0 1.2 Hypothetical Protein compare
mRNA_109 8477 1.0 0.6 Hypothetical Protein compare
mRNA_1319 9687 1.0 0.7 KOG0404 Thioredoxin reductase compare
mRNA_4518 12886 1.0 1.7 Hypothetical Protein compare
mRNA_3364 11732 1.0 0.8 K15423 PPP4C serine/threonine-protein phosphatase 4 catalytic subunit compare
mRNA_5990 14358 1.0 0.4 Hypothetical Protein compare
mRNA_8365 16733 1.0 1.9 Hypothetical Protein compare
mRNA_5765 14133 1.0 2.5 Interpro Promethin compare
mRNA_1657 10025 1.0 5.9 K08286 E2.7.11.- protein-serine/threonine kinase compare
mRNA_3955 12323 1.0 0.8 K02355 fusA, GFM, EFG elongation factor G compare
mRNA_557 8925 1.0 2.2 HMMPfam-Ras association (RalGDS/AF-6) domain-PF00788,ProSiteProfiles-Ras-associating (RA) domain profile.-PS50200,SMART-Ras association (RalGDS/AF-6) domain-SM00314,SUPERFAMILY--SSF54236 compare
mRNA_8258 16626 1.0 1.4 Hypothetical Protein compare
mRNA_460 8828 1.0 2.1 K15177 LEO1 RNA polymerase-associated protein LEO1 compare
mRNA_2549 10917 1.0 0.7 HMMPfam-Chromatin modification-related protein EAF7-PF07904 compare
mRNA_1260 9628 1.0 8.9 Hypothetical Protein compare
mRNA_7116 15484 1.0 4.3 K04393 CDC42 cell division control protein 42 compare
mRNA_4468 12836 1.0 1.5 K11866 STAMBP, AMSH STAM-binding protein compare
mRNA_6485 14853 1.0 2.2 K00826 E2.6.1.42, ilvE branched-chain amino acid aminotransferase compare
mRNA_895 9263 1.0 0.5 Hypothetical Protein compare
mRNA_4364 12732 0.9 2.2 SUPERFAMILY--SSF48371 compare
mRNA_4671 13039 0.9 1.1 Hypothetical Protein compare
mRNA_3544 11912 0.9 1.8 K03506 POLE4 DNA polymerase epsilon subunit 4 compare
mRNA_7796 16164 0.9 0.1 K11322 EPC enhancer of polycomb-like protein compare
mRNA_5509 13877 0.9 1.3 ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850 compare
mRNA_5701 14069 0.9 0.3 K13120 FAM32A protein FAM32A compare
mRNA_1205 9573 0.9 3.9 Hypothetical Protein compare
mRNA_4878 13246 0.9 6.5 K04348 PPP3C, CNA serine/threonine-protein phosphatase 2B catalytic subunit compare
mRNA_4560 12928 0.9 2.0 Hypothetical Protein compare
mRNA_5132 13500 0.9 1.8 K03025 RPC6, POLR3F DNA-directed RNA polymerase III subunit RPC6 compare
mRNA_7656 16024 0.9 1.3 Hypothetical Protein compare
mRNA_8345 16713 0.9 3.4 K00062 E1.1.1.116 D-arabinose 1-dehydrogenase compare
mRNA_4299 12667 0.9 0.6 K12617 PATL1, PAT1 DNA topoisomerase 2-associated protein PAT1 compare
mRNA_5378 13746 0.9 2.8 Hypothetical Protein compare
mRNA_5022 13390 0.9 1.8 Hypothetical Protein compare
mRNA_6220 14588 0.9 0.9 Hypothetical Protein compare
mRNA_8072 16440 0.9 2.5 K14684 SLC25A23S solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41 compare
mRNA_7522 15890 0.9 5.1 HMMPfam-Helix-loop-helix DNA-binding domain-PF00010,ProSiteProfiles-Myc-type, basic helix-loop-helix (bHLH) domain profile.-PS50888,SMART-helix loop helix domain-SM00353,SUPERFAMILY--SSF47459 compare
mRNA_8467 16835 0.9 1.6 Hypothetical Protein compare
mRNA_6716 15084 0.9 2.1 Hypothetical Protein compare
mRNA_5844 14212 0.9 1.7 HMMPfam-Cation efflux family-PF01545,SUPERFAMILY--SSF160240,SUPERFAMILY--SSF161111 compare
mRNA_4764 13132 0.9 0.9 K12842 SR140 U2-associated protein SR140 compare
mRNA_6934 15302 0.9 1.8 K12871 CCDC12 coiled-coil domain-containing protein 12 compare
mRNA_3770 12138 0.9 2.9 K12606 RCD1, CNOT9, CAF40 CCR4-NOT transcription complex subunit 9 compare
mRNA_6114 14482 0.9 1.2 Hypothetical Protein compare
mRNA_7113 15481 0.9 0.8 Hypothetical Protein compare
mRNA_1508 9876 0.9 2.3 KOG3140 Predicted membrane protein compare
mRNA_6138 14506 0.9 1.2 Hypothetical Protein compare
mRNA_7333 15701 0.9 2.3 SUPERFAMILY--SSF52047 compare
mRNA_2148 10516 0.9 2.4 KOG2490 Predicted membrane protein compare
mRNA_7130 15498 0.9 2.1 KOG3077 Uncharacterized conserved protein compare
mRNA_2097 10465 0.9 0.2 K03217 yidC, spoIIIJ, OXA1, ccfA YidC/Oxa1 family membrane protein insertase compare
mRNA_1920 10288 0.9 1.6 Hypothetical Protein compare
mRNA_5652 14020 0.9 0.7 KOG4443 Putative transcription factor HALR/MLL3, involved in embryonic development compare
mRNA_445 8813 0.9 2.6 K03768 PPIB, ppiB peptidyl-prolyl cis-trans isomerase B (cyclophilin B) compare
mRNA_1429 9797 0.9 0.9 HMMPfam-Protein of unknown function (DUF3237)-PF11578 compare
mRNA_2131 10499 0.9 1.7 K09580 PDIA1, P4HB protein disulfide-isomerase A1 compare
mRNA_4192 12560 0.9 0.4 K04797 pfdA, PFDN5 prefoldin alpha subunit compare
mRNA_5862 14230 0.9 2.5 K14998 SURF1, SHY1 surfeit locus 1 family protein compare
mRNA_1916 10284 0.9 2.0 HMMPfam-bZIP transcription factor-PF00170,HMMPfam-Domain of unknown function (DUF3425)-PF11905,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959 compare
mRNA_4080 12448 0.9 0.5 Hypothetical Protein compare
mRNA_1538 9906 0.9 0.9 K20307 TRAPPC10, TRS130 trafficking protein particle complex subunit 10 compare
mRNA_1742 10110 0.9 1.7 SUPERFAMILY--SSF48097 compare
mRNA_916 9284 0.9 2.7 HMMPfam-Activator of mitotic machinery Cdc14 phosphatase activation C-term-PF08632 compare
mRNA_7331 15699 0.9 1.5 KOG1666 V-SNARE compare
mRNA_6649 15017 0.9 0.1 K12580 CNOT3, NOT3 CCR4-NOT transcription complex subunit 3 compare
mRNA_3132 11500 0.9 1.1 Hypothetical Protein compare
mRNA_8343 16711 0.9 1.2 Hypothetical Protein compare
mRNA_7236 15604 0.9 0.4 Hypothetical Protein compare


Specific Phenotypes

None in this experiment

For Rhodosporidium toruloides IFO0880 in buoyancy on lipid accumulation experiments

For buoyancy on lipid accumulation CN120 across organisms

Metabolic Maps

Color code by fitness: see overview map or list of maps.