Experiment setABuoy_Bot for Rhodosporidium toruloides IFO0880

Compare to:

40 hrs Low Buoyancy

200 most detrimental genes:

  gene name fitness t score description  
mRNA_7229 15597 3.6 1.7 Hypothetical Protein compare
mRNA_1130 9498 3.4 1.2 KOG1773 Stress responsive protein compare
mRNA_5863 14231 3.4 2.9 K09281 K09281 copper-fist transcription factor compare
mRNA_5652 14020 3.2 3.4 KOG4443 Putative transcription factor HALR/MLL3, involved in embryonic development compare
mRNA_4966 13334 3.1 3.0 Hypothetical Protein compare
mRNA_3500 11868 3.0 1.2 KOG2519 5'-3' exonuclease compare
mRNA_2647 11015 2.9 1.9 Hypothetical Protein compare
mRNA_3383 11751 2.8 1.1 HMMPfam-BSD domain-PF03909,ProSiteProfiles-BSD domain profile.-PS50858,SMART-domain in transcription factors and synapse-associated proteins-SM00751,SUPERFAMILY--SSF140383 compare
mRNA_5354 13722 2.4 0.7 KOG0557 Dihydrolipoamide acetyltransferase compare
mRNA_7219 15587 2.4 1.4 K15053 CHMP7 charged multivesicular body protein 7 compare
mRNA_7528 15896 2.4 0.5 Hypothetical Protein compare
mRNA_7078 15446 2.4 1.4 Hypothetical Protein compare
mRNA_6443 14811 2.3 0.8 K10427 DCTN5 dynactin 5 compare
mRNA_7392 15760 2.2 0.9 Hypothetical Protein compare
mRNA_4192 12560 2.1 1.4 K04797 pfdA, PFDN5 prefoldin alpha subunit compare
mRNA_6212 14580 2.1 1.4 SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045 compare
mRNA_8011 16379 2.1 1.1 K09537 DNAJC17 DnaJ homolog subfamily C member 17 compare
mRNA_5507 13875 2.1 1.1 KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase compare
mRNA_5334 13702 2.1 1.3 K14563 NOP1, FBL rRNA 2'-O-methyltransferase fibrillarin compare
mRNA_4290 12658 2.1 1.7 Hypothetical Protein compare
mRNA_4349 12717 2.1 1.6 K02873 RP-L13e, RPL13 large subunit ribosomal protein L13e compare
mRNA_1569 9937 2.1 1.2 KOG3114 Uncharacterized conserved protein compare
mRNA_4693 13061 2.0 1.4 Hypothetical Protein compare
mRNA_2459 10827 2.0 1.4 KOG2747 Histone acetyltransferase (MYST family) compare
mRNA_1686 10054 2.0 1.4 BLAST putative protein [Melanopsichium pennsylvanicum 4] compare
mRNA_5077 13445 2.0 1.8 KOG1663 O-methyltransferase compare
mRNA_7792 16160 1.9 0.9 Hypothetical Protein compare
mRNA_1684 10052 1.9 1.5 Hypothetical Protein compare
mRNA_5552 13920 1.9 3.0 K03360 GRR1 F-box and leucine-rich repeat protein GRR1 compare
mRNA_5620 13988 1.9 1.8 HMMPfam-GRF zinc finger-PF06839 compare
mRNA_6846 15214 1.9 1.4 K02603 ORC1 origin recognition complex subunit 1 compare
mRNA_2097 10465 1.9 0.9 K03217 yidC, spoIIIJ, OXA1, ccfA YidC/Oxa1 family membrane protein insertase compare
mRNA_5826 14194 1.9 2.8 SUPERFAMILY--SSF52047 compare
mRNA_3286 11654 1.9 1.0 Hypothetical Protein compare
mRNA_3819 12187 1.8 2.1 HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232 compare
mRNA_3251 11619 1.8 2.8 K19986 EXOC8, SEC84 exocyst complex component 8 compare
mRNA_3786 12154 1.8 4.7 K00006 GPD1 glycerol-3-phosphate dehydrogenase (NAD+) compare
mRNA_5624 13992 1.8 2.0 KOG1611 Predicted short chain-type dehydrogenase compare
mRNA_7095 15463 1.7 1.5 Hypothetical Protein compare
mRNA_1864 10232 1.7 1.1 SUPERFAMILY--SSF53300 compare
mRNA_7818 16186 1.7 1.8 K10865 MRE11 double-strand break repair protein MRE11 compare
mRNA_1393 9761 1.7 1.3 Hypothetical Protein compare
mRNA_6027 14395 1.7 2.0 HMMPfam-Cysteine-rich secretory protein family-PF00188,PRINTS-Allergen V5/Tpx-1 family signature-PR00837,SMART-SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains.-SM00198,SUPERFAMILY--SSF55797 compare
mRNA_3354 11722 1.7 1.7 KOG2395 Protein involved in vacuole import and degradation compare
mRNA_1007 9375 1.7 2.4 HMMPfam-S1/P1 Nuclease-PF02265,SUPERFAMILY--SSF48537 compare
mRNA_2358 10726 1.7 0.7 Hypothetical Protein compare
mRNA_327 8695 1.7 1.1 KOG0378 40S ribosomal protein S4 compare
mRNA_578 8946 1.7 1.3 K05687 PARK7 protein DJ-1 compare
mRNA_4644 13012 1.7 1.4 Hypothetical Protein compare
mRNA_6975 15343 1.6 11.5 Hypothetical Protein compare
mRNA_7881 16249 1.6 1.6 Hypothetical Protein compare
mRNA_5084 13452 1.6 7.4 Hypothetical Protein compare
mRNA_5543 13911 1.6 1.8 K15190 MEPCE, BCDIN3 7SK snRNA methylphosphate capping enzyme compare
mRNA_2111 10479 1.6 0.9 K10575 UBE2G1, UBC7 ubiquitin-conjugating enzyme E2 G1 compare
mRNA_5370 13738 1.6 1.4 K18443 GBF1 golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 compare
mRNA_157 8525 1.6 4.0 KOG3066 Translin-associated protein X compare
mRNA_3848 12216 1.6 3.8 KOG1817 Ribonuclease compare
mRNA_7433 15801 1.5 0.5 K10356 MYO1 myosin I compare
mRNA_5725 14093 1.5 0.4 K03234 EEF2 elongation factor 2 compare
mRNA_937 9305 1.5 5.1 KOG1721 FOG Zn-finger compare
mRNA_2701 11069 1.5 0.9 HMMPfam-Glycosyltransferase sugar-binding region containing DXD motif-PF04488,SUPERFAMILY--SSF53448 compare
mRNA_7568 15936 1.5 0.5 K18753 ZFP36L butyrate response factor 1 compare
mRNA_3956 12324 1.5 2.3 KOG1843 Uncharacterized conserved protein compare
mRNA_1253 9621 1.5 3.3 K04554 UBE2J2, NCUBE2, UBC6 ubiquitin-conjugating enzyme E2 J2 compare
mRNA_6220 14588 1.5 1.5 Hypothetical Protein compare
mRNA_2660 11028 1.5 3.5 Hypothetical Protein compare
mRNA_109 8477 1.5 1.0 Hypothetical Protein compare
mRNA_5136 13504 1.4 1.9 BLAST MYB DNA-binding domain protein [Macrophomina phaseoli... compare
mRNA_5653 14021 1.4 4.1 Hypothetical Protein compare
mRNA_3833 12201 1.4 1.3 K15196 BRF1, GTF3B transcription factor IIIB 90 kDa subunit compare
mRNA_6872 15240 1.4 1.9 KOG3035 Isoamyl acetate-hydrolyzing esterase compare
mRNA_7974 16342 1.4 2.4 Hypothetical Protein compare
mRNA_1134 9502 1.4 1.8 K10685 UBLE1B, SAE2, UBA2 ubiquitin-like 1-activating enzyme E1 B compare
mRNA_7796 16164 1.4 0.4 K11322 EPC enhancer of polycomb-like protein compare
mRNA_8258 16626 1.4 2.2 Hypothetical Protein compare
mRNA_6123 14491 1.4 1.2 BLAST DNA polymerase [Rhizoctonia solani] compare
mRNA_6532 14900 1.3 2.1 K11352 NDUFA12 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 12 compare
mRNA_2311 10679 1.3 3.1 K20195 MON1 vacuolar fusion protein MON1 compare
mRNA_427 8795 1.3 1.1 Hypothetical Protein compare
mRNA_999 9367 1.3 3.8 HMMPfam-PAPA-1-like conserved region-PF04795 compare
mRNA_2748 11116 1.3 1.9 KOG3772 M-phase inducer phosphatase compare
mRNA_5369 13737 1.3 0.8 K03627 MBF1 putative transcription factor compare
mRNA_121 8489 1.3 1.6 BLAST Pc20g03530 [Penicillium rubens Wisconsin 54-1255] compare
mRNA_1032 9400 1.3 1.5 Hypothetical Protein compare
mRNA_1618 9986 1.3 1.2 Hypothetical Protein compare
mRNA_7106 15474 1.3 1.4 K11313 SUPT3H, SPT3 transcription initiation protein SPT3 compare
mRNA_5934 14302 1.3 1.8 HMMPfam-Mitochondrial carrier protein-PF00153,ProSiteProfiles-Solute carrier (Solcar) repeat profile.-PS50920,SUPERFAMILY--SSF103506 compare
mRNA_8008 16376 1.3 1.5 BLAST CAMK/CAMKL protein kinase [Microbotryum lychnidis-dio... compare
mRNA_2352 10720 1.3 1.7 K02903 RP-L28e, RPL28 large subunit ribosomal protein L28e compare
mRNA_5914 14282 1.3 1.7 HMMPfam-Nuclear protein Es2-PF09751 compare
mRNA_6725 15093 1.3 0.1 K07575 K07575 PUA domain protein compare
mRNA_1876 10244 1.3 0.4 Hypothetical Protein compare
mRNA_70 8438 1.2 4.1 HMMPfam-Membrane-associating domain-PF01284 compare
mRNA_5688 14056 1.2 1.5 K12199 VTA1, LIP5 vacuolar protein sorting-associated protein VTA1 compare
mRNA_7453 15821 1.2 0.4 K14407 CSTF2, RNA15 cleavage stimulation factor subunit 2 compare
mRNA_5868 14236 1.2 2.3 HMMPfam-2OG-Fe(II) oxygenase superfamily-PF03171,HMMPfam-non-haem dioxygenase in morphine synthesis N-terminal-PF14226,PRINTS-Isopenicillin N synthase signature-PR00682,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SUPERFAMILY--SSF51197 compare
mRNA_3687 12055 1.2 1.9 K14837 NOP12 nucleolar protein 12 compare
mRNA_8205 16573 1.2 1.0 K11339 MORF4L1, MRG15, EAF3 mortality factor 4-like protein 1 compare
mRNA_7419 15787 1.2 0.9 Hypothetical Protein compare
mRNA_4065 12433 1.2 1.9 KOG1198 Zinc-binding oxidoreductase compare
mRNA_1319 9687 1.2 0.9 KOG0404 Thioredoxin reductase compare
mRNA_7921 16289 1.2 0.5 KOG3022 Predicted ATPase, nucleotide-binding compare
mRNA_6649 15017 1.2 0.4 K12580 CNOT3, NOT3 CCR4-NOT transcription complex subunit 3 compare
mRNA_963 9331 1.2 3.8 K15109 SLC25A20_29, CACT, CACL, CRC1 solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29 compare
mRNA_5509 13877 1.2 2.0 ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850 compare
mRNA_1483 9851 1.2 0.8 BLAST Protein priB [Grifola frondosa] compare
mRNA_2521 10889 1.2 0.4 BLAST beta-glucosidase 1 precursor [Aspergillus rambellii] compare
mRNA_895 9263 1.2 0.6 Hypothetical Protein compare
mRNA_138 8506 1.2 3.5 KOG4473 Uncharacterized membrane protein compare
mRNA_2551 10919 1.2 1.2 K00799 GST, gst glutathione S-transferase compare
mRNA_2708 11076 1.2 2.0 Hypothetical Protein compare
mRNA_34 8402 1.2 0.5 BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ... compare
mRNA_6560 14928 1.2 1.6 Hypothetical Protein compare
mRNA_4654 13022 1.2 0.3 KOG4253 Tryptophan-rich basic nuclear protein compare
mRNA_1202 9570 1.2 2.5 K11253 H3 histone H3 compare
mRNA_5765 14133 1.2 2.8 Interpro Promethin compare
mRNA_5930 14298 1.2 1.2 Hypothetical Protein compare
mRNA_5626 13994 1.2 2.3 KOG1611 Predicted short chain-type dehydrogenase compare
mRNA_4777 13145 1.2 1.1 Hypothetical Protein compare
mRNA_3232 11600 1.2 0.6 ProSiteProfiles-BRCT domain profile.-PS50172 compare
mRNA_1761 10129 1.2 1.2 K07189 PPP1R3 protein phosphatase 1 regulatory subunit 3A/B/C/D/E compare
mRNA_5254 13622 1.1 2.2 HMMPfam-10 TM Acyl Transferase domain found in Cas1p-PF07779,HMMPfam-GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p-PF13839 compare
mRNA_2528 10896 1.1 2.3 HMMPfam-Fungal chitosanase of glycosyl hydrolase group 75-PF07335 compare
mRNA_8467 16835 1.1 1.9 Hypothetical Protein compare
mRNA_7087 15455 1.1 2.1 Hypothetical Protein compare
mRNA_2675 11043 1.1 4.4 HMMPfam-Putative adipose-regulatory protein (Seipin)-PF06775 compare
mRNA_573 8941 1.1 2.4 BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ... compare
mRNA_889 9257 1.1 3.1 HMMPfam-Ribonuclease III domain-PF00636,ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SMART-Ribonuclease III family-SM00535,SUPERFAMILY--SSF69065 compare
mRNA_2462 10830 1.1 0.9 SUPERFAMILY--SSF52047 compare
mRNA_8242 16610 1.1 1.3 KOG3319 Predicted membrane protein compare
mRNA_1321 9689 1.1 1.0 K01687 ilvD dihydroxy-acid dehydratase compare
mRNA_5536 13904 1.1 1.1 Hypothetical Protein compare
mRNA_5144 13512 1.1 0.6 BLAST putative mit domain-containing protein [Erysiphe neca... compare
mRNA_4118 12486 1.1 1.6 Hypothetical Protein compare
mRNA_1891 10259 1.1 0.3 K03083 GSK3B glycogen synthase kinase 3 beta compare
mRNA_1642 10010 1.1 5.1 K03937 NDUFS4 NADH dehydrogenase (ubiquinone) Fe-S protein 4 compare
mRNA_7308 15676 1.1 3.7 Hypothetical Protein compare
mRNA_4009 12377 1.1 1.2 K10639 CCNB1IP1, HEI10 E3 ubiquitin-protein ligase CCNP1IP1 compare
mRNA_3818 12186 1.1 4.0 K09650 PARL, PSARL, PCP1 rhomboid-like protein compare
mRNA_1697 10065 1.1 2.7 BLAST Pro41 protein, putative [Rhizoctonia solani AG-3 Rhs1AP] compare
mRNA_2438 10806 1.1 0.7 HMMPfam-Predicted coiled-coil protein (DUF2205)-PF10224 compare
mRNA_645 9013 1.1 0.2 KOG3104 Mod5 protein sorting/negative effector of RNA Pol III synthesis compare
mRNA_1359 9727 1.1 4.2 K06018 PPN1 endopolyphosphatase compare
mRNA_850 9218 1.1 1.9 SUPERFAMILY--SSF52047 compare
mRNA_3216 11584 1.1 2.3 K12881 THOC4, ALY THO complex subunit 4 compare
mRNA_2291 10659 1.1 2.8 HMMPfam-von Willebrand factor type A domain-PF13519,ProSiteProfiles-VWFA domain profile.-PS50234,SUPERFAMILY--SSF53300 compare
mRNA_7932 16300 1.0 3.7 HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232 compare
mRNA_5671 14039 1.0 2.2 K11675 IES1 Ino eighty subunit 1 compare
mRNA_5020 13388 1.0 2.4 K20178 VPS8 vacuolar protein sorting-associated protein 8 compare
mRNA_4592 12960 1.0 0.6 K11655 BAZ1A, ACF1 bromodomain adjacent to zinc finger domain protein 1A compare
mRNA_2710 11078 1.0 2.4 BLAST putative protein (N-terminal fragment) [Melanopsichiu... compare
mRNA_2913 11281 1.0 4.3 K13703 ABHD11 abhydrolase domain-containing protein 11 compare
mRNA_1426 9794 1.0 3.1 Hypothetical Protein compare
mRNA_3894 12262 1.0 4.1 SUPERFAMILY--SSF54695 compare
mRNA_7417 15785 1.0 1.5 K03353 APC6, CDC16 anaphase-promoting complex subunit 6 compare
mRNA_549 8917 1.0 1.0 K12618 XRN1, SEP1, KEM1 5'-3' exoribonuclease 1 compare
mRNA_3520 11888 1.0 0.4 BLAST mannose-6-phosphate isomerase, class I [Kwoniella... compare
mRNA_7620 15988 1.0 2.5 Hypothetical Protein compare
mRNA_714 9082 1.0 3.8 KOG1201 Hydroxysteroid 17-beta dehydrogenase 11 compare
mRNA_4392 12760 1.0 0.9 KOG3069 Peroxisomal NUDIX hydrolase compare
mRNA_1945 10313 1.0 4.2 Hypothetical Protein compare
mRNA_823 9191 1.0 4.4 HMMPfam-Fungal domain of unknown function (DUF1712)-PF08217 compare
mRNA_936 9304 1.0 3.1 K10365 CAPZB capping protein (actin filament) muscle Z-line, beta compare
mRNA_5713 14081 1.0 0.3 K18819 GOLS inositol 3-alpha-galactosyltransferase compare
mRNA_7146 15514 1.0 2.5 Hypothetical Protein compare
mRNA_7656 16024 1.0 1.4 Hypothetical Protein compare
mRNA_7833 16201 1.0 4.5 HMMPfam-Cryptococcal mannosyltransferase 1-PF11735 compare
mRNA_3085 11453 1.0 5.4 K06269 PPP1C serine/threonine-protein phosphatase PP1 catalytic subunit compare
mRNA_1796 10164 1.0 2.3 K10878 SPO11 meiotic recombination protein SPO11 compare
mRNA_6457 14825 1.0 1.3 Hypothetical Protein compare
mRNA_1500 9868 1.0 1.7 K05770 TSPO, BZRP benzodiazapine receptor compare
mRNA_5570 13938 1.0 0.7 K06067 HDAC1_2 histone deacetylase 1/2 compare
mRNA_5098 13466 1.0 2.6 K08065 NFYB nuclear transcription Y subunit beta compare
mRNA_8018 16386 1.0 1.5 Hypothetical Protein compare
mRNA_2828 11196 1.0 1.5 Hypothetical Protein compare
mRNA_6528 14896 1.0 1.1 K01514 PRUNE, PPX1 exopolyphosphatase compare
mRNA_113 8481 1.0 2.0 KOG0209 P-type ATPase compare
mRNA_4925 13293 1.0 2.7 ProSiteProfiles-WW/rsp5/WWP domain profile.-PS50020,SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045 compare
mRNA_7583 15951 1.0 2.4 HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713 compare
mRNA_5560 13928 1.0 1.2 BLAST PROTEIN D2013.6 [Ceraceosorus bombacis] compare
mRNA_3624 11992 1.0 0.7 SUPERFAMILY--SSF52047 compare
mRNA_7823 16191 1.0 0.4 K03011 RPB3, POLR2C DNA-directed RNA polymerase II subunit RPB3 compare
mRNA_538 8906 1.0 2.5 Hypothetical Protein compare
mRNA_2960 11328 1.0 1.5 KOG2617 Citrate synthase compare
mRNA_3132 11500 1.0 1.3 Hypothetical Protein compare
mRNA_8376 16744 1.0 0.8 Hypothetical Protein compare
mRNA_6229 14597 1.0 5.1 K01895 ACSS, acs acetyl-CoA synthetase compare
mRNA_4236 12604 1.0 2.3 HMMPfam-pinin/SDK/memA/ protein conserved region-PF04696 compare
mRNA_6485 14853 1.0 2.1 K00826 E2.6.1.42, ilvE branched-chain amino acid aminotransferase compare
mRNA_6310 14678 1.0 0.3 Hypothetical Protein compare
mRNA_925 9293 1.0 2.0 K10704 UBE2V ubiquitin-conjugating enzyme E2 variant compare
mRNA_2478 10846 1.0 2.8 K20293 COG6, COD2 conserved oligomeric Golgi complex subunit 6 compare
mRNA_4866 13234 1.0 0.5 KOG2881 Predicted membrane protein compare
mRNA_7156 15524 1.0 4.3 K20102 YTHDF YTH domain-containing family protein compare
mRNA_1382 9750 1.0 5.6 K11805 WDR68, HAN11 WD repeat-containing protein 68 compare
mRNA_4874 13242 1.0 1.1 KOG2922 Uncharacterized conserved protein compare
mRNA_2319 10687 1.0 2.4 KOG3872 FOG FHA domain compare
mRNA_4801 13169 0.9 0.5 HMMPfam-Uncharacterized alpha/beta hydrolase domain (DUF2235)-PF09994 compare
mRNA_5797 14165 0.9 2.9 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 compare
mRNA_1205 9573 0.9 3.6 Hypothetical Protein compare


Specific Phenotypes

None in this experiment

For Rhodosporidium toruloides IFO0880 in buoyancy on lipid accumulation experiments

For buoyancy on lipid accumulation CN120 across organisms

Metabolic Maps

Color code by fitness: see overview map or list of maps.