Experiment setABuoy_All for Rhodosporidium toruloides IFO0880

Compare to:

40 hrs No Buoyancy Separation

200 most detrimental genes:

  gene name fitness t score description  
mRNA_1130 9498 3.6 1.6 KOG1773 Stress responsive protein compare
mRNA_5863 14231 3.5 2.5 K09281 K09281 copper-fist transcription factor compare
mRNA_4966 13334 3.0 2.6 Hypothetical Protein compare
mRNA_2647 11015 3.0 1.8 Hypothetical Protein compare
mRNA_5652 14020 2.7 2.3 KOG4443 Putative transcription factor HALR/MLL3, involved in embryonic development compare
mRNA_6846 15214 2.7 2.0 K02603 ORC1 origin recognition complex subunit 1 compare
mRNA_5144 13512 2.5 2.1 BLAST putative mit domain-containing protein [Erysiphe neca... compare
mRNA_3500 11868 2.5 0.8 KOG2519 5'-3' exonuclease compare
mRNA_7392 15760 2.4 1.1 Hypothetical Protein compare
mRNA_3819 12187 2.4 2.3 HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232 compare
mRNA_1684 10052 2.3 1.6 Hypothetical Protein compare
mRNA_5507 13875 2.2 1.2 KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase compare
mRNA_578 8946 2.2 2.2 K05687 PARK7 protein DJ-1 compare
mRNA_2549 10917 2.2 1.2 HMMPfam-Chromatin modification-related protein EAF7-PF07904 compare
mRNA_8011 16379 2.2 1.1 K09537 DNAJC17 DnaJ homolog subfamily C member 17 compare
mRNA_2358 10726 2.1 1.0 Hypothetical Protein compare
mRNA_6027 14395 2.1 2.5 HMMPfam-Cysteine-rich secretory protein family-PF00188,PRINTS-Allergen V5/Tpx-1 family signature-PR00837,SMART-SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains.-SM00198,SUPERFAMILY--SSF55797 compare
mRNA_5934 14302 2.1 3.0 HMMPfam-Mitochondrial carrier protein-PF00153,ProSiteProfiles-Solute carrier (Solcar) repeat profile.-PS50920,SUPERFAMILY--SSF103506 compare
mRNA_7229 15597 1.9 0.8 Hypothetical Protein compare
mRNA_7453 15821 1.9 1.1 K14407 CSTF2, RNA15 cleavage stimulation factor subunit 2 compare
mRNA_7714 16082 1.9 2.8 Hypothetical Protein compare
mRNA_7219 15587 1.8 1.1 K15053 CHMP7 charged multivesicular body protein 7 compare
mRNA_2462 10830 1.8 1.6 SUPERFAMILY--SSF52047 compare
mRNA_3232 11600 1.8 0.9 ProSiteProfiles-BRCT domain profile.-PS50172 compare
mRNA_2111 10479 1.8 0.9 K10575 UBE2G1, UBC7 ubiquitin-conjugating enzyme E2 G1 compare
mRNA_1618 9986 1.8 1.3 Hypothetical Protein compare
mRNA_3383 11751 1.7 0.7 HMMPfam-BSD domain-PF03909,ProSiteProfiles-BSD domain profile.-PS50858,SMART-domain in transcription factors and synapse-associated proteins-SM00751,SUPERFAMILY--SSF140383 compare
mRNA_3286 11654 1.7 0.8 Hypothetical Protein compare
mRNA_5334 13702 1.7 1.2 K14563 NOP1, FBL rRNA 2'-O-methyltransferase fibrillarin compare
mRNA_4569 12937 1.7 1.5 HMMPfam-Integral peroxisomal membrane peroxin-PF06398 compare
mRNA_7744 16112 1.6 1.6 Hypothetical Protein compare
mRNA_1582 9950 1.6 1.6 K01381 PEP4 saccharopepsin compare
mRNA_3848 12216 1.6 3.3 KOG1817 Ribonuclease compare
mRNA_4866 13234 1.6 0.9 KOG2881 Predicted membrane protein compare
mRNA_1261 9629 1.6 1.0 K04712 DEGS sphingolipid Delta-4 desaturase compare
mRNA_4801 13169 1.6 1.3 HMMPfam-Uncharacterized alpha/beta hydrolase domain (DUF2235)-PF09994 compare
mRNA_7419 15787 1.5 1.0 Hypothetical Protein compare
mRNA_8137 16505 1.5 0.7 K00586 DPH5 diphthine methyl ester synthase compare
mRNA_8289 16657 1.5 7.0 KOG1601 GATA-4/5/6 transcription factors compare
mRNA_7236 15604 1.5 1.2 Hypothetical Protein compare
mRNA_5077 13445 1.5 1.0 KOG1663 O-methyltransferase compare
mRNA_229 8597 1.5 1.1 Hypothetical Protein compare
mRNA_6560 14928 1.5 1.6 Hypothetical Protein compare
mRNA_5536 13904 1.5 1.3 Hypothetical Protein compare
mRNA_2131 10499 1.5 3.1 K09580 PDIA1, P4HB protein disulfide-isomerase A1 compare
mRNA_4592 12960 1.5 0.9 K11655 BAZ1A, ACF1 bromodomain adjacent to zinc finger domain protein 1A compare
mRNA_6123 14491 1.5 1.6 BLAST DNA polymerase [Rhizoctonia solani] compare
mRNA_5990 14358 1.5 0.8 Hypothetical Protein compare
mRNA_5251 13619 1.5 1.2 K12867 SYF1, XAB2 pre-mRNA-splicing factor SYF1 compare
mRNA_5543 13911 1.5 1.2 K15190 MEPCE, BCDIN3 7SK snRNA methylphosphate capping enzyme compare
mRNA_2352 10720 1.5 1.6 K02903 RP-L28e, RPL28 large subunit ribosomal protein L28e compare
mRNA_4673 13041 1.4 0.9 K01069 E3.1.2.6, gloB hydroxyacylglutathione hydrolase compare
mRNA_1214 9582 1.4 1.3 Hypothetical Protein compare
mRNA_4654 13022 1.4 0.8 KOG4253 Tryptophan-rich basic nuclear protein compare
mRNA_7823 16191 1.4 1.0 K03011 RPB3, POLR2C DNA-directed RNA polymerase II subunit RPB3 compare
mRNA_7528 15896 1.4 0.5 Hypothetical Protein compare
mRNA_803 9171 1.4 2.1 HMMPfam-Velvet factor-PF11754 compare
mRNA_645 9013 1.4 0.4 KOG3104 Mod5 protein sorting/negative effector of RNA Pol III synthesis compare
mRNA_2438 10806 1.4 0.8 HMMPfam-Predicted coiled-coil protein (DUF2205)-PF10224 compare
mRNA_7818 16186 1.4 0.9 K10865 MRE11 double-strand break repair protein MRE11 compare
mRNA_1393 9761 1.4 0.6 Hypothetical Protein compare
mRNA_5129 13497 1.4 2.8 Hypothetical Protein compare
mRNA_6725 15093 1.3 0.2 K07575 K07575 PUA domain protein compare
mRNA_7103 15471 1.3 1.2 Hypothetical Protein compare
mRNA_2291 10659 1.3 3.3 HMMPfam-von Willebrand factor type A domain-PF13519,ProSiteProfiles-VWFA domain profile.-PS50234,SUPERFAMILY--SSF53300 compare
mRNA_157 8525 1.3 2.4 KOG3066 Translin-associated protein X compare
mRNA_7078 15446 1.3 0.7 Hypothetical Protein compare
mRNA_8242 16610 1.3 1.3 KOG3319 Predicted membrane protein compare
mRNA_3354 11722 1.3 1.2 KOG2395 Protein involved in vacuole import and degradation compare
mRNA_1660 10028 1.3 2.4 Hypothetical Protein compare
mRNA_4671 13039 1.3 1.7 Hypothetical Protein compare
mRNA_274 8642 1.3 1.4 BLAST Putative Pc16g06240 protein [Torrubiella hemipterigena] compare
mRNA_6485 14853 1.2 2.4 K00826 E2.6.1.42, ilvE branched-chain amino acid aminotransferase compare
mRNA_5930 14298 1.2 1.2 Hypothetical Protein compare
mRNA_6882 15250 1.2 2.1 Hypothetical Protein compare
mRNA_2708 11076 1.2 2.1 Hypothetical Protein compare
mRNA_285 8653 1.2 1.8 Hypothetical Protein compare
mRNA_1569 9937 1.2 0.8 KOG3114 Uncharacterized conserved protein compare
mRNA_3585 11953 1.2 0.5 KOG1339 Aspartyl protease compare
mRNA_109 8477 1.2 1.0 Hypothetical Protein compare
mRNA_7948 16316 1.2 0.6 HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232 compare
mRNA_7063 15431 1.2 1.4 Hypothetical Protein compare
mRNA_4005 12373 1.2 1.3 HMMPfam-bZIP transcription factor-PF00170,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959 compare
mRNA_5080 13448 1.2 2.1 K12486 SMAP stromal membrane-associated protein compare
mRNA_1876 10244 1.2 0.5 Hypothetical Protein compare
mRNA_5626 13994 1.2 2.2 KOG1611 Predicted short chain-type dehydrogenase compare
mRNA_5421 13789 1.2 1.3 Interpro Domain of unknown function (DUF5102) 0 compare
mRNA_3312 11680 1.2 1.8 Hypothetical Protein compare
mRNA_2748 11116 1.2 1.6 KOG3772 M-phase inducer phosphatase compare
mRNA_4192 12560 1.2 0.7 K04797 pfdA, PFDN5 prefoldin alpha subunit compare
mRNA_1870 10238 1.2 1.2 K18043 OCA1 tyrosine-protein phosphatase OCA1 compare
mRNA_5256 13624 1.2 1.9 SUPERFAMILY--SSF53448 compare
mRNA_7373 15741 1.2 3.3 HMMPfam-FAD binding domain-PF01494,PRINTS-Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature-PR00420,SUPERFAMILY--SSF51905 compare
mRNA_8258 16626 1.1 1.6 Hypothetical Protein compare
mRNA_7989 16357 1.1 1.5 HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232 compare
mRNA_4009 12377 1.1 1.2 K10639 CCNB1IP1, HEI10 E3 ubiquitin-protein ligase CCNP1IP1 compare
mRNA_7668 16036 1.1 2.1 K18042 STYX serine/threonine/tyrosine-interacting protein compare
mRNA_460 8828 1.1 2.5 K15177 LEO1 RNA polymerase-associated protein LEO1 compare
mRNA_7737 16105 1.1 1.6 HMMPfam-Antibiotic biosynthesis monooxygenase-PF03992,SUPERFAMILY--SSF54909 compare
mRNA_8246 16614 1.1 1.2 Hypothetical Protein compare
mRNA_1266 9634 1.1 1.8 K00004 BDH, butB (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase compare
mRNA_952 9320 1.1 1.8 Hypothetical Protein compare
mRNA_1151 9519 1.1 1.0 Hypothetical Protein compare
mRNA_967 9335 1.1 1.1 HMMPfam-Starch binding domain-PF00686,SUPERFAMILY--SSF49452 compare
mRNA_597 8965 1.1 2.5 ProSiteProfiles-APSES-type HTH DNA-binding domain profile.-PS51299,SUPERFAMILY--SSF54616 compare
mRNA_916 9284 1.1 3.5 HMMPfam-Activator of mitotic machinery Cdc14 phosphatase activation C-term-PF08632 compare
mRNA_1306 9674 1.1 2.3 HMMPfam-RNase H-PF00075,ProSiteProfiles-RNase H domain profile.-PS50879,SUPERFAMILY--SSF53098 compare
mRNA_7333 15701 1.1 2.4 SUPERFAMILY--SSF52047 compare
mRNA_7480 15848 1.1 0.5 K01868 TARS, thrS threonyl-tRNA synthetase compare
mRNA_2660 11028 1.0 2.2 Hypothetical Protein compare
mRNA_5713 14081 1.0 0.5 K18819 GOLS inositol 3-alpha-galactosyltransferase compare
mRNA_5826 14194 1.0 1.6 SUPERFAMILY--SSF52047 compare
mRNA_427 8795 1.0 0.8 Hypothetical Protein compare
mRNA_406 8774 1.0 0.9 HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735 compare
mRNA_702 9070 1.0 1.0 BLAST RAN guanine nucleotide release factor [Moesziomyces a... compare
mRNA_4925 13293 1.0 2.8 ProSiteProfiles-WW/rsp5/WWP domain profile.-PS50020,SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045 compare
mRNA_6195 14563 1.0 2.1 SUPERFAMILY--SSF52047 compare
mRNA_1834 10202 1.0 2.0 Hypothetical Protein compare
mRNA_6808 15176 1.0 2.1 K12856 PRPF8, PRP8 pre-mRNA-processing factor 8 compare
mRNA_8188 16556 1.0 1.6 K05012 CLCN3_4_5 chloride channel 3/4/5 compare
mRNA_7568 15936 1.0 0.4 K18753 ZFP36L butyrate response factor 1 compare
mRNA_2230 10598 1.0 1.1 HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SMART-Serine/Threonine protein kinases, catalytic domain-SM00220,SUPERFAMILY--SSF56112 compare
mRNA_1007 9375 1.0 1.1 HMMPfam-S1/P1 Nuclease-PF02265,SUPERFAMILY--SSF48537 compare
mRNA_4263 12631 1.0 1.5 K10416 DYNC1LI, DNCLI dynein light intermediate chain 1, cytosolic compare
mRNA_559 8927 1.0 0.7 KOG4672 Uncharacterized conserved low complexity protein compare
mRNA_7932 16300 1.0 3.5 HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232 compare
mRNA_4794 13162 1.0 2.4 Hypothetical Protein compare
mRNA_5509 13877 1.0 1.5 ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850 compare
mRNA_2509 10877 1.0 2.2 HMMPfam-PI31 proteasome regulator-PF08577,HMMPfam-PI31 proteasome regulator N-terminal-PF11566 compare
mRNA_4060 12428 1.0 2.7 K01537 E3.6.3.8 Ca2+-transporting ATPase compare
mRNA_5344 13712 1.0 1.9 KOG4176 Uncharacterized conserved protein compare
mRNA_3669 12037 0.9 1.7 KOG1756 Histone 2A compare
mRNA_1272 9640 0.9 2.1 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 compare
mRNA_7974 16342 0.9 1.5 Hypothetical Protein compare
mRNA_4644 13012 0.9 0.6 Hypothetical Protein compare
mRNA_4299 12667 0.9 0.6 K12617 PATL1, PAT1 DNA topoisomerase 2-associated protein PAT1 compare
mRNA_1697 10065 0.9 3.0 BLAST Pro41 protein, putative [Rhizoctonia solani AG-3 Rhs1AP] compare
mRNA_3559 11927 0.9 0.9 K18622 ADD adducin compare
mRNA_1547 9915 0.9 1.3 K14402 CPSF2, CFT2 cleavage and polyadenylation specificity factor subunit 2 compare
mRNA_912 9280 0.9 2.3 Hypothetical Protein compare
mRNA_2944 11312 0.9 1.8 BLAST Putative CigA protein [Rhizopus microsporus] compare
mRNA_5807 14175 0.9 0.9 HMMPfam-Protein of unknown function (DUF2638)-PF10937 compare
mRNA_7468 15836 0.9 3.1 Hypothetical Protein compare
mRNA_5199 13567 0.9 4.5 K01210 E3.2.1.58 glucan 1,3-beta-glucosidase compare
mRNA_5868 14236 0.9 1.9 HMMPfam-2OG-Fe(II) oxygenase superfamily-PF03171,HMMPfam-non-haem dioxygenase in morphine synthesis N-terminal-PF14226,PRINTS-Isopenicillin N synthase signature-PR00682,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SUPERFAMILY--SSF51197 compare
mRNA_5066 13434 0.9 2.5 KOG3170 Conserved phosducin-like protein compare
mRNA_1538 9906 0.9 0.8 K20307 TRAPPC10, TRS130 trafficking protein particle complex subunit 10 compare
mRNA_4878 13246 0.9 5.3 K04348 PPP3C, CNA serine/threonine-protein phosphatase 2B catalytic subunit compare
mRNA_1141 9509 0.9 1.2 ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257 compare
mRNA_7089 15457 0.9 0.7 Hypothetical Protein compare
mRNA_4917 13285 0.9 1.2 KOG2920 Predicted methyltransferase compare
mRNA_1993 10361 0.9 0.6 Hypothetical Protein compare
mRNA_7881 16249 0.9 0.7 Hypothetical Protein compare
mRNA_1705 10073 0.9 1.5 K03264 EIF6 translation initiation factor 6 compare
mRNA_2189 10557 0.9 1.6 K11236 CDC24 cell division control protein 24 compare
mRNA_256 8624 0.9 0.8 K11254 H4 histone H4 compare
mRNA_7116 15484 0.9 3.4 K04393 CDC42 cell division control protein 42 compare
mRNA_8467 16835 0.9 1.3 Hypothetical Protein compare
mRNA_2876 11244 0.9 1.4 K18715 NUP159 nucleoporin NUP159 compare
mRNA_7198 15566 0.9 1.5 Hypothetical Protein compare
mRNA_1032 9400 0.9 0.9 Hypothetical Protein compare
mRNA_5606 13974 0.9 1.6 HMMPfam-Glycosyl hydrolase family 61-PF03443 compare
mRNA_573 8941 0.9 1.7 BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ... compare
mRNA_2661 11029 0.9 2.4 Interpro GDP-fucose protein O-fucosyltransferase compare
mRNA_7901 16269 0.9 0.5 KOG1605 TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) compare
mRNA_4343 12711 0.9 1.9 K15206 TFC7 transcription factor C subunit 7 compare
mRNA_8205 16573 0.9 0.4 K11339 MORF4L1, MRG15, EAF3 mortality factor 4-like protein 1 compare
mRNA_3392 11760 0.9 1.6 HMMPfam-Caffeine-induced death protein 2-PF09774 compare
mRNA_6700 15068 0.8 1.6 HMMPfam-Amidohydrolase family-PF07969,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556 compare
mRNA_6130 14498 0.8 1.6 K11786 STH1_SNF2 ATP-dependent helicase STH1/SNF2 compare
mRNA_7924 16292 0.8 1.7 Hypothetical Protein compare
mRNA_346 8714 0.8 1.6 KOG3113 Uncharacterized conserved protein compare
mRNA_2070 10438 0.8 2.4 Hypothetical Protein compare
mRNA_2141 10509 0.8 2.2 SUPERFAMILY--SSF52047 compare
mRNA_1202 9570 0.8 1.5 K11253 H3 histone H3 compare
mRNA_6443 14811 0.8 0.3 K10427 DCTN5 dynactin 5 compare
mRNA_340 8708 0.8 2.8 KOG1271 Methyltransferases compare
mRNA_4538 12906 0.8 1.0 KOG2112 Lysophospholipase compare
mRNA_286 8654 0.8 2.2 SUPERFAMILY--SSF52047 compare
mRNA_2563 10931 0.8 2.7 Interpro F-box-like compare
mRNA_2587 10955 0.8 1.4 K04368 MAP2K1, MEK1 mitogen-activated protein kinase kinase 1 compare
mRNA_7087 15455 0.8 1.8 Hypothetical Protein compare
mRNA_6411 14779 0.8 0.4 BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M... compare
mRNA_5797 14165 0.8 3.1 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 compare
mRNA_2201 10569 0.8 1.6 K03005 RPA49, POLR1E DNA-directed RNA polymerase I subunit RPA49 compare
mRNA_4414 12782 0.8 2.0 BLAST DiGeorge syndrome critical region 6 (DGCR6) protein [... compare
mRNA_1742 10110 0.8 1.6 SUPERFAMILY--SSF48097 compare
mRNA_8091 16459 0.8 2.7 K15463 RIT1 tRNA A64-2'-O-ribosylphosphate transferase compare
mRNA_4367 12735 0.8 3.0 K08856 STK16 serine/threonine kinase 16 compare
mRNA_6951 15319 0.8 1.5 ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SUPERFAMILY--SSF69065 compare
mRNA_5491 13859 0.8 2.1 Hypothetical Protein compare
mRNA_5611 13979 0.8 0.2 HMMPfam-Protein of unknown function (DUF2433)-PF10360 compare
mRNA_3956 12324 0.8 1.8 KOG1843 Uncharacterized conserved protein compare
mRNA_5723 14091 0.8 1.6 K15447 TRM44, METTL19 tRNASer (uridine44-2'-O)-methyltransferase compare
mRNA_7583 15951 0.8 1.8 HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713 compare
mRNA_8031 16399 0.8 2.4 K14325 RNPS1 RNA-binding protein with serine-rich domain 1 compare
mRNA_6903 15271 0.8 1.8 Hypothetical Protein compare
mRNA_2681 11049 0.8 1.5 Hypothetical Protein compare
mRNA_5650 14018 0.8 2.6 Hypothetical Protein compare
mRNA_715 9083 0.8 2.0 KOG2893 Zn finger protein compare


Specific Phenotypes

None in this experiment

For Rhodosporidium toruloides IFO0880 in buoyancy on lipid accumulation experiments

For buoyancy on lipid accumulation CN120 across organisms

Metabolic Maps

Color code by fitness: see overview map or list of maps.