Experiment setAAux_YNB_Gluc for Rhodosporidium toruloides IFO0880

Compare to:

YNB Glucose

200 most detrimental genes:

  gene name fitness t score description  
mRNA_3988 12356 2.4 1.3 Hypothetical Protein compare
mRNA_6268 14636 2.4 2.1 HMMPfam-Survival motor neuron protein (SMN)-PF06003 compare
mRNA_327 8695 2.3 2.1 KOG0378 40S ribosomal protein S4 compare
mRNA_3203 11571 2.2 1.6 Hypothetical Protein compare
mRNA_699 9067 2.1 6.5 K20289 COG2 conserved oligomeric Golgi complex subunit 2 compare
mRNA_4878 13246 2.1 13.6 K04348 PPP3C, CNA serine/threonine-protein phosphatase 2B catalytic subunit compare
mRNA_374 8742 2.0 1.7 Hypothetical Protein compare
mRNA_4670 13038 2.0 1.5 Hypothetical Protein compare
mRNA_6799 15167 1.9 0.9 K00033 PGD, gnd, gntZ 6-phosphogluconate dehydrogenase compare
mRNA_3307 11675 1.9 11.2 K06268 PPP3R, CNB serine/threonine-protein phosphatase 2B regulatory subunit compare
mRNA_5624 13992 1.8 1.8 KOG1611 Predicted short chain-type dehydrogenase compare
mRNA_2185 10553 1.8 2.6 HMMPfam-Copper fist DNA binding domain-PF00649,PRINTS-Copper fist domain signature-PR00617,ProSiteProfiles-Copper-fist DNA-binding domain profile.-PS50073,SMART-Copper-Fist-SM00412,SMART--SM01090,SUPERFAMILY--SSF57879 compare
mRNA_1755 10123 1.8 8.7 K00326 E1.6.2.2 cytochrome-b5 reductase compare
mRNA_7424 15792 1.8 1.5 Hypothetical Protein compare
mRNA_7823 16191 1.7 1.0 K03011 RPB3, POLR2C DNA-directed RNA polymerase II subunit RPB3 compare
mRNA_8246 16614 1.7 1.2 Hypothetical Protein compare
mRNA_6771 15139 1.7 1.5 Hypothetical Protein compare
mRNA_4777 13145 1.7 0.5 Hypothetical Protein compare
mRNA_2748 11116 1.6 1.0 KOG3772 M-phase inducer phosphatase compare
mRNA_1969 10337 1.6 1.5 K14961 RBBP5, SWD1, CPS50 COMPASS component SWD1 compare
mRNA_4299 12667 1.6 1.0 K12617 PATL1, PAT1 DNA topoisomerase 2-associated protein PAT1 compare
mRNA_7336 15704 1.6 3.5 Hypothetical Protein compare
mRNA_1538 9906 1.6 1.6 K20307 TRAPPC10, TRS130 trafficking protein particle complex subunit 10 compare
mRNA_1560 9928 1.5 2.8 HMMPfam-Bromodomain-PF00439,ProSiteProfiles-Bromodomain profile.-PS50014,SMART-bromo domain-SM00297,SUPERFAMILY--SSF47370 compare
mRNA_5144 13512 1.5 3.1 BLAST putative mit domain-containing protein [Erysiphe neca... compare
mRNA_7419 15787 1.5 0.7 Hypothetical Protein compare
mRNA_4213 12581 1.5 0.5 K01673 cynT, can carbonic anhydrase compare
mRNA_2270 10638 1.5 5.8 K19833 CLA4 serine/threonine-protein kinase CLA4 compare
mRNA_7315 15683 1.5 1.7 K05527 bolA BolA protein compare
mRNA_7229 15597 1.5 2.0 Hypothetical Protein compare
mRNA_5805 14173 1.5 3.2 HMMPfam-Ion transport protein-PF00520,SUPERFAMILY--SSF81324 compare
mRNA_3516 11884 1.5 1.2 K01466 allB allantoinase compare
mRNA_1480 9848 1.4 0.5 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_2386 10754 1.4 5.1 K01530 E3.6.3.1 phospholipid-translocating ATPase compare
mRNA_177 8545 1.4 0.7 KOG4096 Uncharacterized conserved protein compare
mRNA_182 8550 1.4 0.5 K19828 MTG1 mitochondrial GTPase 1 compare
mRNA_2319 10687 1.4 4.1 KOG3872 FOG FHA domain compare
mRNA_7417 15785 1.4 1.7 K03353 APC6, CDC16 anaphase-promoting complex subunit 6 compare
mRNA_7572 15940 1.4 1.3 Hypothetical Protein compare
mRNA_273 8641 1.4 3.4 K15174 PAF1 RNA polymerase II-associated factor 1 compare
mRNA_5734 14102 1.4 0.6 K01183 E3.2.1.14 chitinase compare
mRNA_2822 11190 1.4 0.5 SUPERFAMILY--SSF52047 compare
mRNA_562 8930 1.3 0.4 HMMPfam-HPC2 and ubinuclein domain-PF08729 compare
mRNA_109 8477 1.3 0.8 Hypothetical Protein compare
mRNA_3580 11948 1.3 0.3 KOG0715 Molecular chaperone (DnaJ superfamily) compare
mRNA_4395 12763 1.3 1.8 HMMPfam-RTA1 like protein-PF04479 compare
mRNA_65 8433 1.3 2.1 K12882 NCBP1, CBP80 nuclear cap-binding protein subunit 1 compare
mRNA_7900 16268 1.3 3.1 Hypothetical Protein compare
mRNA_2905 11273 1.3 4.0 Hypothetical Protein compare
mRNA_5363 13731 1.3 0.8 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_6975 15343 1.3 9.0 Hypothetical Protein compare
mRNA_4891 13259 1.3 3.1 KOG3140 Predicted membrane protein compare
mRNA_2647 11015 1.3 2.0 Hypothetical Protein compare
mRNA_6839 15207 1.3 7.0 K17257 ITFG1 integrin alpha FG-GAP repeat containing protein 1 compare
mRNA_4968 13336 1.3 6.0 KOG4464 Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) compare
mRNA_1188 9556 1.3 1.0 Hypothetical Protein compare
mRNA_5898 14266 1.3 1.6 Hypothetical Protein compare
mRNA_1282 9650 1.3 0.9 Hypothetical Protein compare
mRNA_2189 10557 1.2 3.9 K11236 CDC24 cell division control protein 24 compare
mRNA_8363 16731 1.2 3.7 KOG1693 emp24/gp25L/p24 family of membrane trafficking proteins compare
mRNA_1677 10045 1.2 10.1 K15620 GOLPH3, GPP34 golgi phosphoprotein 3 compare
mRNA_7044 15412 1.2 5.5 KOG4299 PHD Zn-finger protein compare
mRNA_6917 15285 1.2 3.1 K04883 KCNAB2 potassium voltage-gated channel Shaker-related subfamily A, beta member 2 compare
mRNA_8325 16693 1.2 1.2 KOG1688 Golgi proteins involved in ER retention (RER) compare
mRNA_1982 10350 1.2 4.3 HMMPfam-Copper binding proteins, plastocyanin/azurin family-PF00127,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SUPERFAMILY--SSF49503 compare
mRNA_8242 16610 1.2 1.4 KOG3319 Predicted membrane protein compare
mRNA_8159 16527 1.2 3.8 K17607 TIPRL, TIP41 type 2A phosphatase activator TIP41 compare
mRNA_5548 13916 1.2 2.3 KOG4006 Anti-proliferation factor BTG1/TOB compare
mRNA_7448 15816 1.2 0.6 BLAST putative protein of unknown function [Pseudozyma ... compare
mRNA_118 8486 1.2 0.8 HMMPfam-Protein of unknown function (DUF1674)-PF07896 compare
mRNA_5720 14088 1.2 4.6 K04392 RAC1 Ras-related C3 botulinum toxin substrate 1 compare
mRNA_523 8891 1.2 2.5 K11644 SIN3A paired amphipathic helix protein Sin3a compare
mRNA_2891 11259 1.2 2.3 Hypothetical Protein compare
mRNA_2131 10499 1.2 3.1 K09580 PDIA1, P4HB protein disulfide-isomerase A1 compare
mRNA_7146 15514 1.2 3.4 Hypothetical Protein compare
mRNA_5369 13737 1.2 0.5 K03627 MBF1 putative transcription factor compare
mRNA_5603 13971 1.2 4.1 K09523 DNAJC3 DnaJ homolog subfamily C member 3 compare
mRNA_5335 13703 1.1 1.7 HMMPfam-Domain of unknown function (DUF4202)-PF13875 compare
mRNA_3834 12202 1.1 1.9 Hypothetical Protein compare
mRNA_1741 10109 1.1 3.3 HMMPfam-Calcipressin-PF04847 compare
mRNA_263 8631 1.1 6.0 K01537 E3.6.3.8 Ca2+-transporting ATPase compare
mRNA_5807 14175 1.1 2.2 HMMPfam-Protein of unknown function (DUF2638)-PF10937 compare
mRNA_2375 10743 1.1 3.5 Hypothetical Protein compare
mRNA_7510 15878 1.1 4.9 K11644 SIN3A paired amphipathic helix protein Sin3a compare
mRNA_7078 15446 1.1 1.3 Hypothetical Protein compare
mRNA_4065 12433 1.1 1.2 KOG1198 Zinc-binding oxidoreductase compare
mRNA_4237 12605 1.1 0.5 K15100 SLC25A1, CTP solute carrier family 25 (mitochondrial citrate transporter), member 1 compare
mRNA_8199 16567 1.1 0.4 Hypothetical Protein compare
mRNA_7551 15919 1.1 5.4 KOG1032 Uncharacterized conserved protein, contains GRAM domain compare
mRNA_6239 14607 1.1 2.3 K01372 BLMH, pepC bleomycin hydrolase compare
mRNA_6154 14522 1.1 12.6 K16667 PTPRG receptor-type tyrosine-protein phosphatase gamma compare
mRNA_967 9335 1.1 1.1 HMMPfam-Starch binding domain-PF00686,SUPERFAMILY--SSF49452 compare
mRNA_8332 16700 1.1 5.6 K10082 LMAN2, VIP36 lectin, mannose-binding 2 compare
mRNA_6876 15244 1.1 2.4 Hypothetical Protein compare
mRNA_443 8811 1.1 1.5 KOG2742 Predicted oxidoreductase compare
mRNA_7666 16034 1.1 0.8 K20184 VPS41 vacuolar protein sorting-associated protein 41 compare
mRNA_5386 13754 1.1 0.5 Hypothetical Protein compare
mRNA_7374 15742 1.1 0.8 Hypothetical Protein compare
mRNA_1912 10280 1.1 6.8 K04450 ATF2, CREBP1 cyclic AMP-dependent transcription factor ATF-2 compare
mRNA_6224 14592 1.1 1.8 Hypothetical Protein compare
mRNA_7741 16109 1.1 2.8 Hypothetical Protein compare
mRNA_3657 12025 1.0 1.3 Hypothetical Protein compare
mRNA_5167 13535 1.0 3.0 Hypothetical Protein compare
mRNA_753 9121 1.0 3.3 K02737 PSMB5 20S proteasome subunit beta 5 compare
mRNA_6221 14589 1.0 3.7 HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097,SMART-Broad-Complex, Tramtrack and Bric a brac-SM00225,SUPERFAMILY--SSF54695 compare
mRNA_4547 12915 1.0 2.2 ProSiteProfiles-SET domain profile.-PS50280,SUPERFAMILY--SSF82199 compare
mRNA_6195 14563 1.0 2.2 SUPERFAMILY--SSF52047 compare
mRNA_2364 10732 1.0 1.6 K20471 COPD, ARCN1, RET2 coatomer subunit delta compare
mRNA_4662 13030 1.0 2.4 K20352 TMED10, ERV25 p24 family protein delta-1 compare
mRNA_6141 14509 1.0 1.3 HMMPfam-GGL domain-PF00631,SUPERFAMILY--SSF48670 compare
mRNA_2097 10465 1.0 0.2 K03217 yidC, spoIIIJ, OXA1, ccfA YidC/Oxa1 family membrane protein insertase compare
mRNA_3383 11751 1.0 0.5 HMMPfam-BSD domain-PF03909,ProSiteProfiles-BSD domain profile.-PS50858,SMART-domain in transcription factors and synapse-associated proteins-SM00751,SUPERFAMILY--SSF140383 compare
mRNA_7869 16237 1.0 1.9 KOG4366 Predicted thioesterase compare
mRNA_1710 10078 1.0 2.4 Hypothetical Protein compare
mRNA_636 9004 1.0 3.5 Hypothetical Protein compare
mRNA_7571 15939 1.0 0.4 K11450 KDM1A, AOF2, LSD1 lysine-specific histone demethylase 1A compare
mRNA_3890 12258 1.0 4.1 HMMPfam-Pal1 cell morphology protein-PF08316 compare
mRNA_8440 16808 1.0 0.9 Hypothetical Protein compare
mRNA_507 8875 1.0 0.7 K19347 SUN1_2 SUN domain-containing protein 1/2 compare
mRNA_8282 16650 1.0 1.3 K11359 SPT7 transcriptional activator SPT7 compare
mRNA_5808 14176 1.0 1.0 HMMPfam-Cytochrome oxidase complex assembly protein 1-PF08695 compare
mRNA_6562 14930 1.0 2.7 K20353 SEC16 COPII coat assembly protein SEC16 compare
mRNA_7169 15537 1.0 0.3 K13137 STRAP, UNRIP serine-threonine kinase receptor-associated protein compare
mRNA_5091 13459 1.0 3.2 Hypothetical Protein compare
mRNA_1083 9451 1.0 -0.0 Hypothetical Protein compare
mRNA_7515 15883 1.0 9.6 K07827 KRAS, KRAS2 GTPase KRas compare
mRNA_2368 10736 1.0 2.3 Hypothetical Protein compare
mRNA_4854 13222 0.9 3.2 ProSiteProfiles-BTB domain profile.-PS50097 compare
mRNA_2784 11152 0.9 5.8 K20241 WDR44, RAB11BP WD repeat-containing protein 44 compare
mRNA_6536 14904 0.9 4.1 HMMPfam-Protein of unknown function (DUF837)-PF05769 compare
mRNA_2009 10377 0.9 2.6 BLAST ankyrin [Cenococcum geophilum 1.58] compare
mRNA_4605 12973 0.9 1.8 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_6775 15143 0.9 0.3 K14784 CMS1 protein CMS1 compare
mRNA_1211 9579 0.9 1.3 K15078 SLX1 structure-specific endonuclease subunit SLX1 compare
mRNA_1686 10054 0.9 1.5 BLAST putative protein [Melanopsichium pennsylvanicum 4] compare
mRNA_5454 13822 0.9 1.0 KOG2673 Uncharacterized conserved protein, contains PSP domain compare
mRNA_5616 13984 0.9 0.4 HMMPfam-GRF zinc finger-PF06839 compare
mRNA_4205 12573 0.9 3.8 K09276 YBX1, NSEP1 Y-box-binding protein 1 compare
mRNA_8371 16739 0.9 0.4 HMMPfam-GPR1/FUN34/yaaH family-PF01184 compare
mRNA_6819 15187 0.9 3.1 SUPERFAMILY--SSF103107 compare
mRNA_3107 11475 0.9 3.1 K11412 SIRT2, SIR2L2 NAD-dependent deacetylase sirtuin 2 compare
mRNA_3753 12121 0.9 5.9 K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase compare
mRNA_2081 10449 0.9 6.0 BLAST 163.m06341p [Cryptococcus neoformans] compare
mRNA_6489 14857 0.9 5.9 KOG0327 Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases compare
mRNA_2527 10895 0.9 2.2 BLAST protein DGCR14-like [Mucor ambiguus] compare
mRNA_5550 13918 0.9 1.0 K09424 REB1 Myb-like DNA-binding protein REB1 compare
mRNA_5503 13871 0.9 2.6 HMMPfam-Chitin synthase III catalytic subunit-PF12271 compare
mRNA_1260 9628 0.9 8.1 Hypothetical Protein compare
mRNA_2995 11363 0.9 6.2 K20290 COG3, SEC34 conserved oligomeric Golgi complex subunit 3 compare
mRNA_8205 16573 0.9 1.5 K11339 MORF4L1, MRG15, EAF3 mortality factor 4-like protein 1 compare
mRNA_3302 11670 0.9 2.6 K07232 chaC cation transport protein ChaC compare
mRNA_7647 16015 0.9 1.6 KOG2741 Dimeric dihydrodiol dehydrogenase compare
mRNA_7133 15501 0.9 2.5 Hypothetical Protein compare
mRNA_6539 14907 0.9 5.2 K19800 SCH9 serine/threonine protein kinase SCH9 compare
mRNA_2405 10773 0.9 9.9 KOG1910 Uncharacterized conserved protein compare
mRNA_4137 12505 0.9 7.0 BLAST putative protein [Melanopsichium pennsylvanicum 4] compare
mRNA_7200 15568 0.9 2.1 K14816 REI1 pre-60S factor REI1 compare
mRNA_7441 15809 0.9 0.6 K08884 K08884 serine/threonine protein kinase, bacterial compare
mRNA_3405 11773 0.9 0.7 K17922 SNX8, MVP1 sorting nexin-8 compare
mRNA_3392 11760 0.9 1.8 HMMPfam-Caffeine-induced death protein 2-PF09774 compare
mRNA_6278 14646 0.9 1.1 K17080 PHB1 prohibitin 1 compare
mRNA_4261 12629 0.9 1.6 HMMPfam-NUDIX domain-PF00293,ProSitePatterns-Nudix box signature.-PS00893,ProSiteProfiles-Nudix hydrolase domain profile.-PS51462,SUPERFAMILY--SSF55811 compare
mRNA_7125 15493 0.8 3.1 K11315 TADA3, ADA3, NGG1 transcriptional adapter 3 compare
mRNA_7449 15817 0.8 1.9 BLAST GH19984 [Drosophila grimshawi] compare
mRNA_5102 13470 0.8 7.6 KOG0619 FOG Leucine rich repeat compare
mRNA_1673 10041 0.8 1.7 Hypothetical Protein compare
mRNA_1888 10256 0.8 1.4 HMMPfam-Protein of unknown function (DUF2423)-PF10338 compare
mRNA_5518 13886 0.8 2.1 SUPERFAMILY--SSF49599 compare
mRNA_2876 11244 0.8 1.8 K18715 NUP159 nucleoporin NUP159 compare
mRNA_2437 10805 0.8 4.9 Hypothetical Protein compare
mRNA_5055 13423 0.8 3.4 KOG1289 Amino acid transporters compare
mRNA_1031 9399 0.8 1.1 Hypothetical Protein compare
mRNA_1811 10179 0.8 1.5 HMMPfam-Centrosome microtubule-binding domain of Cep57-PF06657 compare
mRNA_6582 14950 0.8 1.8 K11517 HAO (S)-2-hydroxy-acid oxidase compare
mRNA_942 9310 0.8 0.7 KOG1743 Ferric reductase-like proteins compare
mRNA_6369 14737 0.8 1.9 Hypothetical Protein compare
mRNA_6304 14672 0.8 3.1 Hypothetical Protein compare
mRNA_6831 15199 0.8 2.0 HMMPfam-ATP synthase regulation protein NCA2-PF08637 compare
mRNA_7833 16201 0.8 4.0 HMMPfam-Cryptococcal mannosyltransferase 1-PF11735 compare
mRNA_7486 15854 0.8 2.3 K08287 E2.7.12.1 dual-specificity kinase compare
mRNA_7792 16160 0.8 -0.1 Hypothetical Protein compare
mRNA_5126 13494 0.8 1.8 Hypothetical Protein compare
mRNA_6310 14678 0.8 0.4 Hypothetical Protein compare
mRNA_1934 10302 0.8 5.0 HMMPfam-Cryptococcal mannosyltransferase 1-PF11735 compare
mRNA_3012 11380 0.8 3.3 K06269 PPP1C serine/threonine-protein phosphatase PP1 catalytic subunit compare
mRNA_2798 11166 0.8 1.1 K03537 POP5 ribonuclease P/MRP protein subunit POP5 compare
mRNA_8148 16516 0.8 0.8 HMMPfam-START domain-PF01852,ProSiteProfiles-START domain profile.-PS50848,SUPERFAMILY--SSF55961 compare
mRNA_70 8438 0.8 1.9 HMMPfam-Membrane-associating domain-PF01284 compare
mRNA_5460 13828 0.8 1.7 Hypothetical Protein compare
mRNA_7017 15385 0.8 1.6 K03574 mutT, NUDT15, MTH2 8-oxo-dGTP diphosphatase compare
mRNA_192 8560 0.8 1.9 HMMPfam-SUR7/PalI family-PF06687 compare
mRNA_1178 9546 0.8 2.0 Hypothetical Protein compare
mRNA_3727 12095 0.8 2.0 SMART-Leucine rich repeat, ribonuclease inhibitor type-SM00368,SUPERFAMILY--SSF52047 compare
mRNA_6738 15106 0.8 0.8 Hypothetical Protein compare
mRNA_2373 10741 0.8 4.8 K08286 E2.7.11.- protein-serine/threonine kinase compare
mRNA_5174 13542 0.8 2.5 Hypothetical Protein compare
mRNA_2677 11045 0.8 1.8 ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157 compare
mRNA_3445 11813 0.8 1.8 HMMPfam-BRO1-like domain-PF03097,ProSiteProfiles-BRO1 domain profile.-PS51180,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SMART-BRO1-like domain-SM01041 compare
mRNA_7000 15368 0.8 6.8 K06653 PHO81 CDK inhibitor PHO81 compare
mRNA_6184 14552 0.8 2.0 Hypothetical Protein compare


Specific Phenotypes

None in this experiment

For Rhodosporidium toruloides IFO0880 in auxotrophy experiments

For auxotrophy unknown across organisms

Metabolic Maps

Color code by fitness: see overview map or list of maps.