Experiment setAAux_Met for Rhodosporidium toruloides IFO0880

Compare to:

YNB Glucose 75mM Methionine

200 most detrimental genes:

  gene name fitness t score description  
mRNA_6268 14636 2.6 2.3 HMMPfam-Survival motor neuron protein (SMN)-PF06003 compare
mRNA_5369 13737 2.3 1.7 K03627 MBF1 putative transcription factor compare
mRNA_3988 12356 2.2 1.2 Hypothetical Protein compare
mRNA_4670 13038 2.2 1.3 Hypothetical Protein compare
mRNA_4213 12581 2.1 1.2 K01673 cynT, can carbonic anhydrase compare
mRNA_4878 13246 2.0 15.7 K04348 PPP3C, CNA serine/threonine-protein phosphatase 2B catalytic subunit compare
mRNA_6775 15143 1.9 1.0 K14784 CMS1 protein CMS1 compare
mRNA_7666 16034 1.9 1.5 K20184 VPS41 vacuolar protein sorting-associated protein 41 compare
mRNA_699 9067 1.8 5.6 K20289 COG2 conserved oligomeric Golgi complex subunit 2 compare
mRNA_7419 15787 1.8 0.8 Hypothetical Protein compare
mRNA_118 8486 1.8 1.2 HMMPfam-Protein of unknown function (DUF1674)-PF07896 compare
mRNA_2748 11116 1.8 1.4 KOG3772 M-phase inducer phosphatase compare
mRNA_7823 16191 1.8 1.3 K03011 RPB3, POLR2C DNA-directed RNA polymerase II subunit RPB3 compare
mRNA_327 8695 1.8 1.1 KOG0378 40S ribosomal protein S4 compare
mRNA_5616 13984 1.8 1.7 HMMPfam-GRF zinc finger-PF06839 compare
mRNA_3203 11571 1.7 1.2 Hypothetical Protein compare
mRNA_2319 10687 1.7 4.7 KOG3872 FOG FHA domain compare
mRNA_374 8742 1.7 1.2 Hypothetical Protein compare
mRNA_3305 11673 1.7 0.7 KOG3299 Uncharacterized conserved protein compare
mRNA_1560 9928 1.7 2.8 HMMPfam-Bromodomain-PF00439,ProSiteProfiles-Bromodomain profile.-PS50014,SMART-bromo domain-SM00297,SUPERFAMILY--SSF47370 compare
mRNA_4065 12433 1.7 2.5 KOG1198 Zinc-binding oxidoreductase compare
mRNA_1969 10337 1.6 1.6 K14961 RBBP5, SWD1, CPS50 COMPASS component SWD1 compare
mRNA_3307 11675 1.6 9.5 K06268 PPP3R, CNB serine/threonine-protein phosphatase 2B regulatory subunit compare
mRNA_1755 10123 1.6 7.0 K00326 E1.6.2.2 cytochrome-b5 reductase compare
mRNA_7374 15742 1.6 1.5 Hypothetical Protein compare
mRNA_1538 9906 1.5 1.8 K20307 TRAPPC10, TRS130 trafficking protein particle complex subunit 10 compare
mRNA_6738 15106 1.5 1.5 Hypothetical Protein compare
mRNA_5144 13512 1.5 2.9 BLAST putative mit domain-containing protein [Erysiphe neca... compare
mRNA_177 8545 1.5 0.7 KOG4096 Uncharacterized conserved protein compare
mRNA_2185 10553 1.5 2.4 HMMPfam-Copper fist DNA binding domain-PF00649,PRINTS-Copper fist domain signature-PR00617,ProSiteProfiles-Copper-fist DNA-binding domain profile.-PS50073,SMART-Copper-Fist-SM00412,SMART--SM01090,SUPERFAMILY--SSF57879 compare
mRNA_4891 13259 1.4 3.5 KOG3140 Predicted membrane protein compare
mRNA_443 8811 1.4 2.1 KOG2742 Predicted oxidoreductase compare
mRNA_182 8550 1.4 0.4 K19828 MTG1 mitochondrial GTPase 1 compare
mRNA_4237 12605 1.4 0.8 K15100 SLC25A1, CTP solute carrier family 25 (mitochondrial citrate transporter), member 1 compare
mRNA_3516 11884 1.4 0.9 K01466 allB allantoinase compare
mRNA_2364 10732 1.4 2.3 K20471 COPD, ARCN1, RET2 coatomer subunit delta compare
mRNA_5805 14173 1.4 2.5 HMMPfam-Ion transport protein-PF00520,SUPERFAMILY--SSF81324 compare
mRNA_5734 14102 1.4 0.6 K01183 E3.2.1.14 chitinase compare
mRNA_7336 15704 1.4 3.2 Hypothetical Protein compare
mRNA_3580 11948 1.4 0.6 KOG0715 Molecular chaperone (DnaJ superfamily) compare
mRNA_2905 11273 1.4 4.0 Hypothetical Protein compare
mRNA_523 8891 1.3 2.6 K11644 SIN3A paired amphipathic helix protein Sin3a compare
mRNA_2270 10638 1.3 5.7 K19833 CLA4 serine/threonine-protein kinase CLA4 compare
mRNA_6281 14649 1.3 1.8 HMMPfam-Stress responsive A/B Barrel Domain-PF07876,ProSiteProfiles-Stress-response A/B barrel domain profile.-PS51502,SMART-Stress responsive A/B Barrel Domain-SM00886,SUPERFAMILY--SSF54909 compare
mRNA_2386 10754 1.3 4.6 K01530 E3.6.3.1 phospholipid-translocating ATPase compare
mRNA_3121 11489 1.3 0.7 KOG1039 Predicted E3 ubiquitin ligase compare
mRNA_5386 13754 1.3 0.1 Hypothetical Protein compare
mRNA_7554 15922 1.3 0.2 K07359 CAMKK calcium/calmodulin-dependent protein kinase kinase compare
mRNA_7424 15792 1.3 0.8 Hypothetical Protein compare
mRNA_1213 9581 1.3 0.7 KOG1205 Predicted dehydrogenase compare
mRNA_6141 14509 1.2 1.9 HMMPfam-GGL domain-PF00631,SUPERFAMILY--SSF48670 compare
mRNA_547 8915 1.2 1.7 KOG2385 Uncharacterized conserved protein compare
mRNA_7169 15537 1.2 0.9 K13137 STRAP, UNRIP serine-threonine kinase receptor-associated protein compare
mRNA_273 8641 1.2 3.2 K15174 PAF1 RNA polymerase II-associated factor 1 compare
mRNA_8216 16584 1.2 1.4 K14376 PAP poly(A) polymerase compare
mRNA_3917 12285 1.2 2.2 KOG4479 Transcription factor e(y)2 compare
mRNA_6799 15167 1.2 0.2 K00033 PGD, gnd, gntZ 6-phosphogluconate dehydrogenase compare
mRNA_8199 16567 1.2 0.8 Hypothetical Protein compare
mRNA_7869 16237 1.2 1.9 KOG4366 Predicted thioesterase compare
mRNA_2798 11166 1.2 1.7 K03537 POP5 ribonuclease P/MRP protein subunit POP5 compare
mRNA_2189 10557 1.2 3.7 K11236 CDC24 cell division control protein 24 compare
mRNA_7510 15878 1.2 6.0 K11644 SIN3A paired amphipathic helix protein Sin3a compare
mRNA_1710 10078 1.2 2.4 Hypothetical Protein compare
mRNA_1912 10280 1.2 9.5 K04450 ATF2, CREBP1 cyclic AMP-dependent transcription factor ATF-2 compare
mRNA_7417 15785 1.2 1.2 K03353 APC6, CDC16 anaphase-promoting complex subunit 6 compare
mRNA_8148 16516 1.2 1.5 HMMPfam-START domain-PF01852,ProSiteProfiles-START domain profile.-PS50848,SUPERFAMILY--SSF55961 compare
mRNA_753 9121 1.2 3.7 K02737 PSMB5 20S proteasome subunit beta 5 compare
mRNA_7572 15940 1.2 0.9 Hypothetical Protein compare
mRNA_5548 13916 1.2 2.1 KOG4006 Anti-proliferation factor BTG1/TOB compare
mRNA_2375 10743 1.2 3.7 Hypothetical Protein compare
mRNA_1480 9848 1.1 0.3 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_7116 15484 1.1 4.7 K04393 CDC42 cell division control protein 42 compare
mRNA_1083 9451 1.1 0.8 Hypothetical Protein compare
mRNA_109 8477 1.1 0.7 Hypothetical Protein compare
mRNA_6154 14522 1.1 12.8 K16667 PTPRG receptor-type tyrosine-protein phosphatase gamma compare
mRNA_2677 11045 1.1 3.0 ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157 compare
mRNA_2405 10773 1.1 13.0 KOG1910 Uncharacterized conserved protein compare
mRNA_2822 11190 1.1 0.4 SUPERFAMILY--SSF52047 compare
mRNA_4730 13098 1.1 2.3 K06062 PCAF, KAT2, GCN5 histone acetyltransferase compare
mRNA_3286 11654 1.1 0.4 Hypothetical Protein compare
mRNA_4317 12685 1.1 2.5 K07025 K07025 putative hydrolase of the HAD superfamily compare
mRNA_65 8433 1.1 2.0 K12882 NCBP1, CBP80 nuclear cap-binding protein subunit 1 compare
mRNA_1806 10174 1.1 1.7 BLAST related to C2H2 zinc finger protein [Ustilago hordei] compare
mRNA_6224 14592 1.1 1.7 Hypothetical Protein compare
mRNA_8067 16435 1.0 2.7 K12399 AP3S AP-3 complex subunit sigma compare
mRNA_5460 13828 1.0 2.0 Hypothetical Protein compare
mRNA_7378 15746 1.0 1.6 KOG1180 Acyl-CoA synthetase compare
mRNA_1243 9611 1.0 2.2 K02493 hemK, prmC, HEMK release factor glutamine methyltransferase compare
mRNA_3015 11383 1.0 1.0 KOG3252 Uncharacterized conserved protein compare
mRNA_5624 13992 1.0 0.9 KOG1611 Predicted short chain-type dehydrogenase compare
mRNA_6951 15319 1.0 2.1 ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SUPERFAMILY--SSF69065 compare
mRNA_1741 10109 1.0 2.3 HMMPfam-Calcipressin-PF04847 compare
mRNA_5174 13542 1.0 2.6 Hypothetical Protein compare
mRNA_1556 9924 1.0 2.2 KOG3114 Uncharacterized conserved protein compare
mRNA_8246 16614 1.0 0.5 Hypothetical Protein compare
mRNA_3302 11670 1.0 3.0 K07232 chaC cation transport protein ChaC compare
mRNA_8365 16733 1.0 2.7 Hypothetical Protein compare
mRNA_3729 12097 1.0 3.5 K15280 SLC35C2 solute carrier family 35, member C2 compare
mRNA_8013 16381 1.0 3.2 SUPERFAMILY--SSF58113 compare
mRNA_8370 16738 1.0 2.6 K12525 metL bifunctional aspartokinase / homoserine dehydrogenase 2 compare
mRNA_3890 12258 1.0 4.5 HMMPfam-Pal1 cell morphology protein-PF08316 compare
mRNA_263 8631 1.0 5.4 K01537 E3.6.3.8 Ca2+-transporting ATPase compare
mRNA_5808 14176 1.0 1.1 HMMPfam-Cytochrome oxidase complex assembly protein 1-PF08695 compare
mRNA_6819 15187 1.0 4.2 SUPERFAMILY--SSF103107 compare
mRNA_275 8643 1.0 0.8 BLAST nitrogen assimilation transcription factor [Rhodo... compare
mRNA_876 9244 1.0 2.9 K00297 metF, MTHFR methylenetetrahydrofolate reductase (NADPH) compare
mRNA_2784 11152 1.0 6.6 K20241 WDR44, RAB11BP WD repeat-containing protein 44 compare
mRNA_1982 10350 1.0 2.9 HMMPfam-Copper binding proteins, plastocyanin/azurin family-PF00127,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SUPERFAMILY--SSF49503 compare
mRNA_4605 12973 1.0 1.9 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_3834 12202 0.9 1.6 Hypothetical Protein compare
mRNA_7044 15412 0.9 3.9 KOG4299 PHD Zn-finger protein compare
mRNA_1188 9556 0.9 0.6 Hypothetical Protein compare
mRNA_6839 15207 0.9 5.2 K17257 ITFG1 integrin alpha FG-GAP repeat containing protein 1 compare
mRNA_7900 16268 0.9 2.3 Hypothetical Protein compare
mRNA_7078 15446 0.9 1.1 Hypothetical Protein compare
mRNA_967 9335 0.9 1.0 HMMPfam-Starch binding domain-PF00686,SUPERFAMILY--SSF49452 compare
mRNA_7019 15387 0.9 2.5 K13212 LUC7L2 RNA-binding protein Luc7-like 2 compare
mRNA_6221 14589 0.9 2.6 HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097,SMART-Broad-Complex, Tramtrack and Bric a brac-SM00225,SUPERFAMILY--SSF54695 compare
mRNA_6489 14857 0.9 6.8 KOG0327 Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases compare
mRNA_7146 15514 0.9 2.7 Hypothetical Protein compare
mRNA_3498 11866 0.9 1.6 K18064 ACR2 arsenical-resistance protein 2 compare
mRNA_3781 12149 0.9 3.1 K12821 PRPF40, PRP40 pre-mRNA-processing factor 40 compare
mRNA_5846 14214 0.9 2.2 K04508 TBL1 transducin (beta)-like 1 compare
mRNA_5102 13470 0.9 7.4 KOG0619 FOG Leucine rich repeat compare
mRNA_8138 16506 0.9 2.5 Hypothetical Protein compare
mRNA_3687 12055 0.9 1.3 K14837 NOP12 nucleolar protein 12 compare
mRNA_4509 12877 0.9 1.8 HMMPfam-Ctr copper transporter family-PF04145 compare
mRNA_5589 13957 0.9 1.7 HMMPfam-Region in Clathrin and VPS-PF00637,ProSiteProfiles-Clathrin heavy-chain (CHCR) repeat profile.-PS50236,SMART-Clathrin heavy chain repeat homology-SM00299,SUPERFAMILY--SSF48371 compare
mRNA_8205 16573 0.9 1.5 K11339 MORF4L1, MRG15, EAF3 mortality factor 4-like protein 1 compare
mRNA_6975 15343 0.9 5.5 Hypothetical Protein compare
mRNA_8159 16527 0.9 2.5 K17607 TIPRL, TIP41 type 2A phosphatase activator TIP41 compare
mRNA_7449 15817 0.9 1.9 BLAST GH19984 [Drosophila grimshawi] compare
mRNA_4968 13336 0.9 4.5 KOG4464 Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) compare
mRNA_6239 14607 0.9 1.5 K01372 BLMH, pepC bleomycin hydrolase compare
mRNA_3410 11778 0.9 1.9 BLAST allergen [Malassezia sympodialis ATCC 42132] compare
mRNA_8245 16613 0.9 1.6 HMMPfam-Mitochondrial carrier protein-PF00153,ProSiteProfiles-Solute carrier (Solcar) repeat profile.-PS50920,SUPERFAMILY--SSF103506 compare
mRNA_3254 11622 0.9 0.6 K12161 URM1 ubiquitin related modifier 1 compare
mRNA_4049 12417 0.9 2.0 HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685 compare
mRNA_6195 14563 0.9 1.7 SUPERFAMILY--SSF52047 compare
mRNA_4777 13145 0.8 -0.0 Hypothetical Protein compare
mRNA_5581 13949 0.8 2.6 KOG1198 Zinc-binding oxidoreductase compare
mRNA_5603 13971 0.8 3.2 K09523 DNAJC3 DnaJ homolog subfamily C member 3 compare
mRNA_7551 15919 0.8 4.4 KOG1032 Uncharacterized conserved protein, contains GRAM domain compare
mRNA_192 8560 0.8 2.2 HMMPfam-SUR7/PalI family-PF06687 compare
mRNA_1394 9762 0.8 1.3 K04907 KCNH4 potassium voltage-gated channel Eag-related subfamily H member 4 compare
mRNA_7486 15854 0.8 2.0 K08287 E2.7.12.1 dual-specificity kinase compare
mRNA_4723 13091 0.8 0.8 Hypothetical Protein compare
mRNA_4992 13360 0.8 2.9 Hypothetical Protein compare
mRNA_4961 13329 0.8 0.5 Hypothetical Protein compare
mRNA_5204 13572 0.8 0.7 Hypothetical Protein compare
mRNA_331 8699 0.8 1.5 K03940 NDUFS7 NADH dehydrogenase (ubiquinone) Fe-S protein 7 compare
mRNA_1260 9628 0.8 7.9 Hypothetical Protein compare
mRNA_6305 14673 0.8 1.0 HMMPfam-FAM72 protein-PF14976,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028 compare
mRNA_1934 10302 0.8 4.9 HMMPfam-Cryptococcal mannosyltransferase 1-PF11735 compare
mRNA_6823 15191 0.8 0.8 BLAST TNFR/NGFR cysteine-rich region family protein [Rh... compare
mRNA_6674 15042 0.8 2.5 HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232 compare
mRNA_7343 15711 0.8 1.8 K04798 pfdB, PFDN6 prefoldin beta subunit compare
mRNA_817 9185 0.8 2.4 K02208 CDK8_11 cyclin-dependent kinase 8/11 compare
mRNA_2081 10449 0.8 4.8 BLAST 163.m06341p [Cryptococcus neoformans] compare
mRNA_4618 12986 0.8 0.9 Hypothetical Protein compare
mRNA_2660 11028 0.8 2.2 Hypothetical Protein compare
mRNA_8117 16485 0.8 3.7 K06041 kdsD, kpsF arabinose-5-phosphate isomerase compare
mRNA_6553 14921 0.8 4.1 SUPERFAMILY--SSF52266 compare
mRNA_1916 10284 0.8 1.7 HMMPfam-bZIP transcription factor-PF00170,HMMPfam-Domain of unknown function (DUF3425)-PF11905,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959 compare
mRNA_2741 11109 0.8 1.1 HMMPfam-Telomeric single stranded DNA binding POT1/CDC13-PF02765,SUPERFAMILY--SSF50249 compare
mRNA_6536 14904 0.8 3.0 HMMPfam-Protein of unknown function (DUF837)-PF05769 compare
mRNA_3107 11475 0.8 2.7 K11412 SIRT2, SIR2L2 NAD-dependent deacetylase sirtuin 2 compare
mRNA_6346 14714 0.8 3.5 HMMPfam-Protein of unknown function (DUF938)-PF06080,SUPERFAMILY--SSF53335 compare
mRNA_6304 14672 0.8 3.2 Hypothetical Protein compare
mRNA_2487 10855 0.8 1.7 BLAST putative protein [Melanopsichium pennsylvanicum 4] compare
mRNA_3626 11994 0.8 1.8 BLAST SH3 domain-containing protein [Rhizoctonia solani AG-... compare
mRNA_5934 14302 0.8 2.1 HMMPfam-Mitochondrial carrier protein-PF00153,ProSiteProfiles-Solute carrier (Solcar) repeat profile.-PS50920,SUPERFAMILY--SSF103506 compare
mRNA_7515 15883 0.8 7.7 K07827 KRAS, KRAS2 GTPase KRas compare
mRNA_4917 13285 0.8 0.8 KOG2920 Predicted methyltransferase compare
mRNA_1677 10045 0.8 5.3 K15620 GOLPH3, GPP34 golgi phosphoprotein 3 compare
mRNA_4637 13005 0.8 2.9 Hypothetical Protein compare
mRNA_6322 14690 0.8 3.9 K09420 MYB myb proto-oncogene protein compare
mRNA_1215 9583 0.8 0.8 Hypothetical Protein compare
mRNA_5723 14091 0.8 1.5 K15447 TRM44, METTL19 tRNASer (uridine44-2'-O)-methyltransferase compare
mRNA_7450 15818 0.8 0.8 BLAST proteophosphoglycan protein, putative [Rhizoctonia so... compare
mRNA_2368 10736 0.8 1.7 Hypothetical Protein compare
mRNA_1876 10244 0.8 1.1 Hypothetical Protein compare
mRNA_70 8438 0.8 2.0 HMMPfam-Membrane-associating domain-PF01284 compare
mRNA_2995 11363 0.8 4.8 K20290 COG3, SEC34 conserved oligomeric Golgi complex subunit 3 compare
mRNA_5747 14115 0.8 3.3 HMMPfam-F-box-like-PF12937 compare
mRNA_6582 14950 0.8 1.5 K11517 HAO (S)-2-hydroxy-acid oxidase compare
mRNA_2589 10957 0.8 2.2 Hypothetical Protein compare
mRNA_7422 15790 0.8 1.8 Hypothetical Protein compare
mRNA_2688 11056 0.8 1.3 Hypothetical Protein compare
mRNA_6529 14897 0.8 3.6 K03626 EGD2, NACA nascent polypeptide-associated complex subunit alpha compare
mRNA_1866 10234 0.8 2.2 KOG4455 Uncharacterized conserved protein compare
mRNA_5151 13519 0.7 2.7 HMMPfam-SUR7/PalI family-PF06687 compare
mRNA_6710 15078 0.7 2.7 SUPERFAMILY--SSF50685 compare
mRNA_6301 14669 0.7 1.8 Hypothetical Protein compare
mRNA_6539 14907 0.7 4.3 K19800 SCH9 serine/threonine protein kinase SCH9 compare
mRNA_3012 11380 0.7 2.7 K06269 PPP1C serine/threonine-protein phosphatase PP1 catalytic subunit compare
mRNA_4662 13030 0.7 1.7 K20352 TMED10, ERV25 p24 family protein delta-1 compare
mRNA_4802 13170 0.7 3.6 K09313 CUTL homeobox protein cut-like compare
mRNA_8394 16762 0.7 3.9 KOG3680 Uncharacterized conserved protein compare
mRNA_6562 14930 0.7 2.0 K20353 SEC16 COPII coat assembly protein SEC16 compare


Specific Phenotypes

None in this experiment

For Rhodosporidium toruloides IFO0880 in auxotrophy experiments

For auxotrophy unknown across organisms

Metabolic Maps

Color code by fitness: see overview map or list of maps.