Experiment setAAux_Arg for Rhodosporidium toruloides IFO0880

Compare to:

YNB Glucose 75mM Arginine

200 most detrimental genes:

  gene name fitness t score description  
mRNA_4237 12605 2.4 2.5 K15100 SLC25A1, CTP solute carrier family 25 (mitochondrial citrate transporter), member 1 compare
mRNA_2822 11190 2.3 0.8 SUPERFAMILY--SSF52047 compare
mRNA_3305 11673 2.2 1.4 KOG3299 Uncharacterized conserved protein compare
mRNA_6738 15106 2.2 2.3 Hypothetical Protein compare
mRNA_327 8695 2.1 2.5 KOG0378 40S ribosomal protein S4 compare
mRNA_3203 11571 2.0 1.6 Hypothetical Protein compare
mRNA_4670 13038 2.0 1.6 Hypothetical Protein compare
mRNA_4878 13246 1.9 12.9 K04348 PPP3C, CNA serine/threonine-protein phosphatase 2B catalytic subunit compare
mRNA_699 9067 1.9 5.6 K20289 COG2 conserved oligomeric Golgi complex subunit 2 compare
mRNA_3988 12356 1.9 1.2 Hypothetical Protein compare
mRNA_5369 13737 1.9 1.3 K03627 MBF1 putative transcription factor compare
mRNA_7419 15787 1.9 1.0 Hypothetical Protein compare
mRNA_6775 15143 1.9 1.0 K14784 CMS1 protein CMS1 compare
mRNA_6268 14636 1.8 1.4 HMMPfam-Survival motor neuron protein (SMN)-PF06003 compare
mRNA_3307 11675 1.8 10.3 K06268 PPP3R, CNB serine/threonine-protein phosphatase 2B regulatory subunit compare
mRNA_182 8550 1.8 0.9 K19828 MTG1 mitochondrial GTPase 1 compare
mRNA_8246 16614 1.7 1.6 Hypothetical Protein compare
mRNA_109 8477 1.7 1.3 Hypothetical Protein compare
mRNA_7417 15785 1.7 2.0 K03353 APC6, CDC16 anaphase-promoting complex subunit 6 compare
mRNA_3516 11884 1.7 1.1 K01466 allB allantoinase compare
mRNA_2185 10553 1.7 3.0 HMMPfam-Copper fist DNA binding domain-PF00649,PRINTS-Copper fist domain signature-PR00617,ProSiteProfiles-Copper-fist DNA-binding domain profile.-PS50073,SMART-Copper-Fist-SM00412,SMART--SM01090,SUPERFAMILY--SSF57879 compare
mRNA_2748 11116 1.7 1.2 KOG3772 M-phase inducer phosphatase compare
mRNA_6799 15167 1.6 0.6 K00033 PGD, gnd, gntZ 6-phosphogluconate dehydrogenase compare
mRNA_4213 12581 1.6 0.9 K01673 cynT, can carbonic anhydrase compare
mRNA_275 8643 1.6 1.3 BLAST nitrogen assimilation transcription factor [Rhodo... compare
mRNA_1755 10123 1.6 8.5 K00326 E1.6.2.2 cytochrome-b5 reductase compare
mRNA_1538 9906 1.6 1.6 K20307 TRAPPC10, TRS130 trafficking protein particle complex subunit 10 compare
mRNA_5386 13754 1.6 1.0 Hypothetical Protein compare
mRNA_5144 13512 1.6 3.1 BLAST putative mit domain-containing protein [Erysiphe neca... compare
mRNA_1480 9848 1.6 0.8 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_4777 13145 1.5 0.3 Hypothetical Protein compare
mRNA_967 9335 1.5 2.0 HMMPfam-Starch binding domain-PF00686,SUPERFAMILY--SSF49452 compare
mRNA_5624 13992 1.5 1.4 KOG1611 Predicted short chain-type dehydrogenase compare
mRNA_118 8486 1.5 1.4 HMMPfam-Protein of unknown function (DUF1674)-PF07896 compare
mRNA_443 8811 1.5 3.3 KOG2742 Predicted oxidoreductase compare
mRNA_1969 10337 1.4 1.6 K14961 RBBP5, SWD1, CPS50 COMPASS component SWD1 compare
mRNA_6141 14509 1.4 2.1 HMMPfam-GGL domain-PF00631,SUPERFAMILY--SSF48670 compare
mRNA_7666 16034 1.4 1.1 K20184 VPS41 vacuolar protein sorting-associated protein 41 compare
mRNA_374 8742 1.4 0.9 Hypothetical Protein compare
mRNA_7792 16160 1.4 0.3 Hypothetical Protein compare
mRNA_7441 15809 1.4 1.4 K08884 K08884 serine/threonine protein kinase, bacterial compare
mRNA_2905 11273 1.4 4.0 Hypothetical Protein compare
mRNA_7823 16191 1.3 1.0 K03011 RPB3, POLR2C DNA-directed RNA polymerase II subunit RPB3 compare
mRNA_6239 14607 1.3 3.5 K01372 BLMH, pepC bleomycin hydrolase compare
mRNA_1560 9928 1.3 2.3 HMMPfam-Bromodomain-PF00439,ProSiteProfiles-Bromodomain profile.-PS50014,SMART-bromo domain-SM00297,SUPERFAMILY--SSF47370 compare
mRNA_3121 11489 1.3 0.7 KOG1039 Predicted E3 ubiquitin ligase compare
mRNA_7078 15446 1.3 1.5 Hypothetical Protein compare
mRNA_7900 16268 1.3 3.2 Hypothetical Protein compare
mRNA_5808 14176 1.3 1.6 HMMPfam-Cytochrome oxidase complex assembly protein 1-PF08695 compare
mRNA_273 8641 1.3 2.9 K15174 PAF1 RNA polymerase II-associated factor 1 compare
mRNA_5548 13916 1.3 2.3 KOG4006 Anti-proliferation factor BTG1/TOB compare
mRNA_2319 10687 1.3 3.6 KOG3872 FOG FHA domain compare
mRNA_486 8854 1.3 2.2 HMMPfam-Domain of unknown function (DUF202)-PF02656 compare
mRNA_177 8545 1.3 1.2 KOG4096 Uncharacterized conserved protein compare
mRNA_1285 9653 1.3 2.1 Interpro Ribosomal protein 60S L18 and 50S L18e 0 compare
mRNA_6224 14592 1.3 2.1 Hypothetical Protein compare
mRNA_4891 13259 1.2 2.2 KOG3140 Predicted membrane protein compare
mRNA_2386 10754 1.2 3.8 K01530 E3.6.3.1 phospholipid-translocating ATPase compare
mRNA_2097 10465 1.2 0.3 K03217 yidC, spoIIIJ, OXA1, ccfA YidC/Oxa1 family membrane protein insertase compare
mRNA_5863 14231 1.2 1.5 K09281 K09281 copper-fist transcription factor compare
mRNA_8199 16567 1.2 0.8 Hypothetical Protein compare
mRNA_2009 10377 1.2 3.2 BLAST ankyrin [Cenococcum geophilum 1.58] compare
mRNA_4509 12877 1.2 2.3 HMMPfam-Ctr copper transporter family-PF04145 compare
mRNA_4961 13329 1.2 0.8 Hypothetical Protein compare
mRNA_7169 15537 1.2 0.9 K13137 STRAP, UNRIP serine-threonine kinase receptor-associated protein compare
mRNA_7336 15704 1.1 2.3 Hypothetical Protein compare
mRNA_4065 12433 1.1 1.5 KOG1198 Zinc-binding oxidoreductase compare
mRNA_1741 10109 1.1 3.8 HMMPfam-Calcipressin-PF04847 compare
mRNA_3879 12247 1.1 2.3 Interpro Selenoprotein SelK_SelG compare
mRNA_5734 14102 1.1 0.6 K01183 E3.2.1.14 chitinase compare
mRNA_2270 10638 1.1 5.1 K19833 CLA4 serine/threonine-protein kinase CLA4 compare
mRNA_5805 14173 1.1 1.6 HMMPfam-Ion transport protein-PF00520,SUPERFAMILY--SSF81324 compare
mRNA_427 8795 1.1 1.6 Hypothetical Protein compare
mRNA_4912 13280 1.1 2.3 KOG3309 Ferredoxin compare
mRNA_3917 12285 1.1 1.7 KOG4479 Transcription factor e(y)2 compare
mRNA_192 8560 1.1 3.2 HMMPfam-SUR7/PalI family-PF06687 compare
mRNA_6582 14950 1.1 2.7 K11517 HAO (S)-2-hydroxy-acid oxidase compare
mRNA_3302 11670 1.1 3.8 K07232 chaC cation transport protein ChaC compare
mRNA_7869 16237 1.1 1.6 KOG4366 Predicted thioesterase compare
mRNA_2189 10557 1.1 3.4 K11236 CDC24 cell division control protein 24 compare
mRNA_5603 13971 1.1 3.9 K09523 DNAJC3 DnaJ homolog subfamily C member 3 compare
mRNA_2798 11166 1.1 1.6 K03537 POP5 ribonuclease P/MRP protein subunit POP5 compare
mRNA_2891 11259 1.1 2.2 Hypothetical Protein compare
mRNA_263 8631 1.1 6.1 K01537 E3.6.3.8 Ca2+-transporting ATPase compare
mRNA_2364 10732 1.1 1.7 K20471 COPD, ARCN1, RET2 coatomer subunit delta compare
mRNA_3834 12202 1.1 1.8 Hypothetical Protein compare
mRNA_4395 12763 1.1 1.6 HMMPfam-RTA1 like protein-PF04479 compare
mRNA_4968 13336 1.1 4.8 KOG4464 Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) compare
mRNA_6876 15244 1.0 2.9 Hypothetical Protein compare
mRNA_6839 15207 1.0 6.2 K17257 ITFG1 integrin alpha FG-GAP repeat containing protein 1 compare
mRNA_1511 9879 1.0 2.2 KOG2136 Transcriptional regulators binding to the GC-rich sequences compare
mRNA_2595 10963 1.0 1.7 K14012 SHP1, UBX1, NSFL1C UBX domain-containing protein 1 compare
mRNA_6154 14522 1.0 12.5 K16667 PTPRG receptor-type tyrosine-protein phosphatase gamma compare
mRNA_4005 12373 1.0 1.1 HMMPfam-bZIP transcription factor-PF00170,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959 compare
mRNA_2876 11244 1.0 2.2 K18715 NUP159 nucleoporin NUP159 compare
mRNA_5616 13984 1.0 0.7 HMMPfam-GRF zinc finger-PF06839 compare
mRNA_6304 14672 1.0 3.5 Hypothetical Protein compare
mRNA_7374 15742 1.0 0.8 Hypothetical Protein compare
mRNA_1178 9546 1.0 2.5 Hypothetical Protein compare
mRNA_1569 9937 1.0 1.1 KOG3114 Uncharacterized conserved protein compare
mRNA_3580 11948 1.0 0.1 KOG0715 Molecular chaperone (DnaJ superfamily) compare
mRNA_6771 15139 1.0 1.1 Hypothetical Protein compare
mRNA_4569 12937 1.0 1.4 HMMPfam-Integral peroxisomal membrane peroxin-PF06398 compare
mRNA_1677 10045 1.0 7.0 K15620 GOLPH3, GPP34 golgi phosphoprotein 3 compare
mRNA_5918 14286 1.0 0.5 K11498 CENPE centromeric protein E compare
mRNA_5091 13459 1.0 3.4 Hypothetical Protein compare
mRNA_921 9289 1.0 2.5 KOG1485 Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) compare
mRNA_6195 14563 1.0 2.1 SUPERFAMILY--SSF52047 compare
mRNA_4190 12558 1.0 2.1 Hypothetical Protein compare
mRNA_4632 13000 1.0 1.6 K13107 RBMX2, IST3 RNA-binding motif protein, X-linked 2 compare
mRNA_523 8891 1.0 1.5 K11644 SIN3A paired amphipathic helix protein Sin3a compare
mRNA_6536 14904 0.9 3.9 HMMPfam-Protein of unknown function (DUF837)-PF05769 compare
mRNA_7551 15919 0.9 4.8 KOG1032 Uncharacterized conserved protein, contains GRAM domain compare
mRNA_3987 12355 0.9 2.9 K08576 CAPN7 calpain-7 compare
mRNA_1282 9650 0.9 0.8 Hypothetical Protein compare
mRNA_2081 10449 0.9 6.0 BLAST 163.m06341p [Cryptococcus neoformans] compare
mRNA_1806 10174 0.9 1.2 BLAST related to C2H2 zinc finger protein [Ustilago hordei] compare
mRNA_7510 15878 0.9 4.6 K11644 SIN3A paired amphipathic helix protein Sin3a compare
mRNA_8419 16787 0.9 1.2 K14310 NUP205, NUP192 nuclear pore complex protein Nup205 compare
mRNA_6310 14678 0.9 0.4 Hypothetical Protein compare
mRNA_2784 11152 0.9 5.8 K20241 WDR44, RAB11BP WD repeat-containing protein 44 compare
mRNA_1929 10297 0.9 3.8 K07880 RAB4B Ras-related protein Rab-4B compare
mRNA_70 8438 0.9 2.2 HMMPfam-Membrane-associating domain-PF01284 compare
mRNA_7044 15412 0.9 3.7 KOG4299 PHD Zn-finger protein compare
mRNA_7019 15387 0.9 3.2 K13212 LUC7L2 RNA-binding protein Luc7-like 2 compare
mRNA_5898 14266 0.9 0.9 Hypothetical Protein compare
mRNA_7378 15746 0.9 1.3 KOG1180 Acyl-CoA synthetase compare
mRNA_318 8686 0.9 1.4 Interpro Fungal domain of unknown function (DUF1750) compare
mRNA_1934 10302 0.9 5.2 HMMPfam-Cryptococcal mannosyltransferase 1-PF11735 compare
mRNA_5460 13828 0.9 2.3 Hypothetical Protein compare
mRNA_4673 13041 0.9 1.8 K01069 E3.1.2.6, gloB hydroxyacylglutathione hydrolase compare
mRNA_8121 16489 0.9 1.0 Hypothetical Protein compare
mRNA_3012 11380 0.9 3.2 K06269 PPP1C serine/threonine-protein phosphatase PP1 catalytic subunit compare
mRNA_3890 12258 0.9 3.6 HMMPfam-Pal1 cell morphology protein-PF08316 compare
mRNA_3116 11484 0.9 4.5 BLAST Pogo transposable element [Larimichthys crocea] compare
mRNA_2647 11015 0.9 1.4 Hypothetical Protein compare
mRNA_1982 10350 0.9 2.8 HMMPfam-Copper binding proteins, plastocyanin/azurin family-PF00127,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SUPERFAMILY--SSF49503 compare
mRNA_6777 15145 0.9 1.3 Hypothetical Protein compare
mRNA_1211 9579 0.9 1.4 K15078 SLX1 structure-specific endonuclease subunit SLX1 compare
mRNA_7448 15816 0.9 0.5 BLAST putative protein of unknown function [Pseudozyma ... compare
mRNA_8363 16731 0.9 3.5 KOG1693 emp24/gp25L/p24 family of membrane trafficking proteins compare
mRNA_5180 13548 0.9 3.6 Hypothetical Protein compare
mRNA_5846 14214 0.9 1.5 K04508 TBL1 transducin (beta)-like 1 compare
mRNA_1213 9581 0.9 0.3 KOG1205 Predicted dehydrogenase compare
mRNA_6489 14857 0.9 6.1 KOG0327 Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases compare
mRNA_1031 9399 0.9 1.1 Hypothetical Protein compare
mRNA_8402 16770 0.9 2.9 K07579 K07579 putative methylase compare
mRNA_7449 15817 0.9 1.5 BLAST GH19984 [Drosophila grimshawi] compare
mRNA_6819 15187 0.8 3.5 SUPERFAMILY--SSF103107 compare
mRNA_4917 13285 0.8 0.8 KOG2920 Predicted methyltransferase compare
mRNA_5155 13523 0.8 2.2 BLAST unknown [Tremella fuciformis] compare
mRNA_3445 11813 0.8 2.7 HMMPfam-BRO1-like domain-PF03097,ProSiteProfiles-BRO1 domain profile.-PS51180,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SMART-BRO1-like domain-SM01041 compare
mRNA_2368 10736 0.8 1.9 Hypothetical Protein compare
mRNA_6401 14769 0.8 0.8 HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112 compare
mRNA_7392 15760 0.8 1.0 Hypothetical Protein compare
mRNA_4854 13222 0.8 3.2 ProSiteProfiles-BTB domain profile.-PS50097 compare
mRNA_1674 10042 0.8 4.0 K07297 ADIPOR adiponectin receptor compare
mRNA_8457 16825 0.8 2.4 K02728 PSMA4 20S proteasome subunit alpha 3 compare
mRNA_7428 15796 0.8 1.3 Interpro XLF-Cernunnos, XRcc4-like factor, NHEJ component compare
mRNA_4919 13287 0.8 6.2 K01768 E4.6.1.1 adenylate cyclase compare
mRNA_6281 14649 0.8 1.0 HMMPfam-Stress responsive A/B Barrel Domain-PF07876,ProSiteProfiles-Stress-response A/B barrel domain profile.-PS51502,SMART-Stress responsive A/B Barrel Domain-SM00886,SUPERFAMILY--SSF54909 compare
mRNA_3107 11475 0.8 2.7 K11412 SIRT2, SIR2L2 NAD-dependent deacetylase sirtuin 2 compare
mRNA_4637 13005 0.8 3.1 Hypothetical Protein compare
mRNA_4605 12973 0.8 1.5 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_3392 11760 0.8 2.0 HMMPfam-Caffeine-induced death protein 2-PF09774 compare
mRNA_1260 9628 0.8 7.8 Hypothetical Protein compare
mRNA_1214 9582 0.8 1.0 Hypothetical Protein compare
mRNA_7103 15471 0.8 1.4 Hypothetical Protein compare
mRNA_8245 16613 0.8 1.5 HMMPfam-Mitochondrial carrier protein-PF00153,ProSiteProfiles-Solute carrier (Solcar) repeat profile.-PS50920,SUPERFAMILY--SSF103506 compare
mRNA_7200 15568 0.8 2.2 K14816 REI1 pre-60S factor REI1 compare
mRNA_1912 10280 0.8 5.8 K04450 ATF2, CREBP1 cyclic AMP-dependent transcription factor ATF-2 compare
mRNA_1832 10200 0.8 3.8 K11188 PRDX6 peroxiredoxin 6, 1-Cys peroxiredoxin compare
mRNA_6823 15191 0.8 0.9 BLAST TNFR/NGFR cysteine-rich region family protein [Rh... compare
mRNA_715 9083 0.8 3.2 KOG2893 Zn finger protein compare
mRNA_2437 10805 0.8 4.8 Hypothetical Protein compare
mRNA_397 8765 0.8 3.2 SUPERFAMILY--SSF52047 compare
mRNA_4723 13091 0.8 0.6 Hypothetical Protein compare
mRNA_1487 9855 0.8 1.1 K01883 CARS, cysS cysteinyl-tRNA synthetase compare
mRNA_8476 16844 0.8 1.9 BLAST glycoside hydrolase family 43 protein [Mycena chlorop... compare
mRNA_2235 10603 0.8 2.1 K11843 USP14, UBP6 ubiquitin carboxyl-terminal hydrolase 14 compare
mRNA_3617 11985 0.8 1.8 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_1615 9983 0.8 0.3 K03283 HSPA1_8 heat shock 70kDa protein 1/8 compare
mRNA_4812 13180 0.8 1.9 K15255 PIF1 ATP-dependent DNA helicase PIF1 compare
mRNA_3015 11383 0.8 0.8 KOG3252 Uncharacterized conserved protein compare
mRNA_1708 10076 0.8 2.6 HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232 compare
mRNA_4137 12505 0.8 5.9 BLAST putative protein [Melanopsichium pennsylvanicum 4] compare
mRNA_5720 14088 0.8 2.3 K04392 RAC1 Ras-related C3 botulinum toxin substrate 1 compare
mRNA_7424 15792 0.8 0.2 Hypothetical Protein compare
mRNA_6411 14779 0.8 0.2 BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M... compare
mRNA_6285 14653 0.8 1.6 K05610 UCHL5, UCH37 ubiquitin carboxyl-terminal hydrolase L5 compare
mRNA_6975 15343 0.8 4.9 Hypothetical Protein compare
mRNA_748 9116 0.8 4.5 Hypothetical Protein compare
mRNA_1891 10259 0.8 1.7 K03083 GSK3B glycogen synthase kinase 3 beta compare
mRNA_4503 12871 0.8 1.2 K12397 AP3B AP-3 complex subunit beta compare
mRNA_2405 10773 0.7 8.5 KOG1910 Uncharacterized conserved protein compare
mRNA_113 8481 0.7 1.4 KOG0209 P-type ATPase compare
mRNA_5102 13470 0.7 6.3 KOG0619 FOG Leucine rich repeat compare
mRNA_3597 11965 0.7 0.7 K15562 BUR1, SGV1 serine/threonine-protein kinase BUR1 compare
mRNA_4244 12612 0.7 2.0 Hypothetical Protein compare
mRNA_2688 11056 0.7 0.7 Hypothetical Protein compare


Specific Phenotypes

None in this experiment

For Rhodosporidium toruloides IFO0880 in auxotrophy experiments

For auxotrophy unknown across organisms

Metabolic Maps

Color code by fitness: see overview map or list of maps.