Top cofit genes for mRNA_1272 from Rhodosporidium toruloides IFO0880

mRNA_1272 9640 : HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701

 

Rank Hit Name Description Conserved? Cofitness  
1 mRNA_3559 11927 K18622 ADD adducin no 0.78
2 mRNA_7707 16075 HMMPfam-PAZ domain-PF02170,HMMPfam-Piwi domain-PF02171,HMMPfam-Domain of unknown function (DUF1785)-PF08699,ProSiteProfiles-PAZ domain profile.-PS50821,ProSiteProfiles-Piwi domain profile.-PS50822,SMART--SM00950,SUPERFAMILY--SSF101690,SUPERFAMILY--SSF53098 no 0.77
3 mRNA_933 9301 HMMPfam-NDT80 / PhoG like DNA-binding family-PF05224,ProSiteProfiles-NDT80 DNA-binding domain profile.-PS51517,SUPERFAMILY--SSF49417 no 0.76
4 mRNA_2445 10813 HMMPfam-Protein of unknown function (DUF3533)-PF12051 no 0.75
5 mRNA_8423 16791 SUPERFAMILY--SSF52047 no 0.75
6 mRNA_2647 11015 Hypothetical Protein no 0.74
7 mRNA_5334 13702 K14563 NOP1, FBL rRNA 2'-O-methyltransferase fibrillarin no 0.73
8 mRNA_5997 14365 BLAST expressed protein [Cryptococcus neoformans var. neofo... no 0.72
9 mRNA_7974 16342 Hypothetical Protein no 0.71
10 mRNA_6375 14743 K01178 E3.2.1.3 glucoamylase no 0.70
11 mRNA_4206 12574 Hypothetical Protein no 0.70
12 mRNA_1306 9674 HMMPfam-RNase H-PF00075,ProSiteProfiles-RNase H domain profile.-PS50879,SUPERFAMILY--SSF53098 no 0.70
13 mRNA_2988 11356 KOG1212 Amidases no 0.69
14 mRNA_1079 9447 HMMPfam-Frag1/DRAM/Sfk1 family-PF10277 no 0.69
15 mRNA_8197 16565 KOG2922 Uncharacterized conserved protein no 0.69
16 mRNA_1620 9988 Hypothetical Protein no 0.69
17 mRNA_5609 13977 HMMPfam-Leucine Rich Repeat-PF00560,ProSiteProfiles-Leucine-rich repeat profile.-PS51450,SMART-Leucine-rich repeats, typical (most populated) subfamily-SM00369,SUPERFAMILY--SSF52058 no 0.69
18 mRNA_7393 15761 HMMPfam-Velvet factor-PF11754 no 0.68
19 mRNA_5863 14231 K09281 K09281 copper-fist transcription factor no 0.68
20 mRNA_7325 15693 K01640 E4.1.3.4, HMGCL, hmgL hydroxymethylglutaryl-CoA lyase no 0.68