Top cofit genes for mRNA_8228 from Rhodosporidium toruloides IFO0880

mRNA_8228 16596 : K11648 SMARCB1, SNF5, INI1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1

 

Rank Hit Name Description Conserved? Cofitness  
1 mRNA_8070 16438 KOG2744 DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain no 0.78
2 mRNA_69 8437 K03029 PSMD4, RPN10 26S proteasome regulatory subunit N10 no 0.74
3 mRNA_6106 14474 K08332 VAC8 vacuolar protein 8 no 0.69
4 mRNA_3703 12071 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 no 0.68
5 mRNA_6130 14498 K11786 STH1_SNF2 ATP-dependent helicase STH1/SNF2 no 0.67
6 mRNA_8271 16639 K14397 NUDT21, CPSF5, CFIM25 cleavage and polyadenylation specificity factor subunit 5 no 0.67
7 mRNA_5196 13564 K17218 sqr sulfide-quinone oxidoreductase no 0.66
8 mRNA_1046 9414 K11346 ING4 inhibitor of growth protein 4 no 0.63
9 mRNA_7371 15739 Hypothetical Protein no 0.63
10 mRNA_3118 11486 K01881 PARS, proS prolyl-tRNA synthetase no 0.63
11 mRNA_2982 11350 Hypothetical Protein no 0.61
12 mRNA_2452 10820 HMMPfam-Ribonuclease H2 non-catalytic subunit (Ylr154p-like)-PF08615 no 0.60
13 mRNA_5071 13439 KOG3038 Histone acetyltransferase SAGA associated factor SGF29 no 0.60
14 mRNA_4753 13121 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 no 0.60
15 mRNA_8087 16455 ProSiteProfiles-BRCT domain profile.-PS50172,SUPERFAMILY--SSF52113 no 0.59
16 mRNA_8446 16814 K01115 PLD1_2 phospholipase D1/2 no 0.59
17 mRNA_8289 16657 KOG1601 GATA-4/5/6 transcription factors no 0.59
18 mRNA_3394 11762 HMMPfam-UreF-PF01730 no 0.59
19 mRNA_955 9323 Hypothetical Protein no 0.59
20 mRNA_3751 12119 K11348 BRPF1 bromodomain and PHD finger-containing protein 1 no 0.59