Top cofit genes for mRNA_4412 from Rhodosporidium toruloides IFO0880

mRNA_4412 12780 : SUPERFAMILY--SSF52047

 

Rank Hit Name Description Conserved? Cofitness  
1 mRNA_7525 15893 KOG3425 Uncharacterized conserved protein no 0.78
2 mRNA_2804 11172 K10808 RRM2 ribonucleoside-diphosphate reductase subunit M2 no 0.76
3 mRNA_8077 16445 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 no 0.74
4 mRNA_6259 14627 HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713 no 0.74
5 mRNA_1218 9586 SUPERFAMILY--SSF52047 no 0.74
6 mRNA_6814 15182 HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232 no 0.73
7 mRNA_6728 15096 K14309 NUP93, NIC96 nuclear pore complex protein Nup93 no 0.72
8 mRNA_2175 10543 HMMPfam-Mus7/MMS22 family-PF09462 no 0.72
9 mRNA_1721 10089 K11483 HOS2 histone deacetylase HOS2 no 0.71
10 mRNA_4871 13239 K03777 dld D-lactate dehydrogenase no 0.71
11 mRNA_4282 12650 Hypothetical Protein no 0.70
12 mRNA_6257 14625 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701 no 0.70
13 mRNA_665 9033 K08853 AAK AP2-associated kinase no 0.70
14 mRNA_3190 11558 KOG2427 Uncharacterized conserved protein no 0.69
15 mRNA_123 8491 Hypothetical Protein no 0.69
16 mRNA_3758 12126 HMMPfam-Glycosyl hydrolases family 15-PF00723,SUPERFAMILY--SSF48208 no 0.69
17 mRNA_5770 14138 K15171 SUPT4H1, SPT4 transcription elongation factor SPT4 no 0.69
18 mRNA_2322 10690 Hypothetical Protein no 0.69
19 mRNA_4686 13054 HMMPfam-COMPASS (Complex proteins associated with Set1p) component shg1-PF05205 no 0.68
20 mRNA_1204 9572 K11253 H3 histone H3 no 0.68