Top cofit genes for mRNA_3886 from Rhodosporidium toruloides IFO0880

mRNA_3886 12254 : K14298 RAE1, GLE2 mRNA export factor

 

Rank Hit Name Description Conserved? Cofitness  
1 mRNA_6196 14564 Hypothetical Protein no 0.83
2 mRNA_2302 10670 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 no 0.82
3 mRNA_4422 12790 BLAST Regulator of nonsense transcripts UPF2 [Grifola frond... no 0.81
4 mRNA_4387 12755 HMMPfam-Ctf8-PF09696 no 0.80
5 mRNA_3548 11916 K19307 BMT5 25S rRNA (uracil2634-N3)-methyltransferase no 0.79
6 mRNA_5459 13827 K11274 WDHD1, CTF4 chromosome transmission fidelity protein 4 no 0.78
7 mRNA_50 8418 KOG1611 Predicted short chain-type dehydrogenase no 0.78
8 mRNA_2646 11014 HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52058 no 0.77
9 mRNA_4732 13100 HMMPfam-Major intrinsic protein-PF00230,PRINTS-Major intrinsic protein family signature-PR00783,SUPERFAMILY--SSF81338 no 0.77
10 mRNA_225 8593 KOG0619 FOG Leucine rich repeat no 0.77
11 mRNA_2515 10883 KOG0035 Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) no 0.76
12 mRNA_6641 15009 K11863 ATXN3, MJD Ataxin-3 no 0.76
13 mRNA_4889 13257 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 no 0.76
14 mRNA_3733 12101 BLAST Hybrid signal transduction histidine kinase B [Leucoa... no 0.75
15 mRNA_5294 13662 K02830 HRAD1, RAD17 cell cycle checkpoint protein no 0.74
16 mRNA_5438 13806 K06867 K06867 uncharacterized protein no 0.74
17 mRNA_3632 12000 HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112 no 0.74
18 mRNA_2066 10434 SUPERFAMILY--SSF52047 no 0.73
19 mRNA_6758 15126 HMMPfam-Beta-lactamase-PF00144,SUPERFAMILY--SSF56601 no 0.73
20 mRNA_1822 10190 KOG0627 Heat shock transcription factor no 0.73