Top cofit genes for mRNA_3595 from Rhodosporidium toruloides IFO0880

mRNA_3595 11963 : K09838 ZEP, ABA1 zeaxanthin epoxidase

 

Rank Hit Name Description Conserved? Cofitness  
1 mRNA_5668 14036 K01227 E3.2.1.96 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase no 0.74
2 mRNA_5267 13635 KOG2504 Monocarboxylate transporter no 0.73
3 mRNA_3361 11729 K11247 SH3GL endophilin-A no 0.73
4 mRNA_5625 13993 KOG1611 Predicted short chain-type dehydrogenase no 0.72
5 mRNA_4041 12409 HMMPfam-Sds3-like-PF08598 no 0.72
6 mRNA_8154 16522 HMMPfam-Ketopantoate reductase PanE/ApbA-PF02558,HMMPfam-Ketopantoate reductase PanE/ApbA C terminal-PF08546,SUPERFAMILY--SSF48179 no 0.72
7 mRNA_2961 11329 ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 no 0.71
8 mRNA_4262 12630 KOG2688 Transcription-associated recombination protein - Thp1p no 0.70
9 mRNA_5052 13420 Hypothetical Protein no 0.70
10 mRNA_1951 10319 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 no 0.70
11 mRNA_2219 10587 Hypothetical Protein no 0.70
12 mRNA_7677 16045 Hypothetical Protein no 0.69
13 mRNA_5948 14316 HMMPfam-Zinc finger C-x8-C-x5-C-x3-H type-PF14608,ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103,SMART-zinc finger-SM00356 no 0.69
14 mRNA_5288 13656 HMMPfam-Complex I intermediate-associated protein 30 (CIA30)-PF08547,SUPERFAMILY--SSF49785 no 0.69
15 mRNA_5313 13681 KOG0108 mRNA cleavage and polyadenylation factor I complex, subunit RNA15 no 0.69
16 mRNA_3957 12325 KOG0254 Predicted transporter (major facilitator superfamily) no 0.69
17 mRNA_6734 15102 Hypothetical Protein no 0.68
18 mRNA_8216 16584 K14376 PAP poly(A) polymerase no 0.68
19 mRNA_3660 12028 HMMPfam-ATPase family associated with various cellular activities (AAA)-PF00004,SUPERFAMILY--SSF52540 no 0.68
20 mRNA_6662 15030 HMMPfam-G-patch domain-PF01585,HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,ProSiteProfiles-G-patch domain profile.-PS50174,SMART-RNA recognition motif-SM00360,SMART-glycine rich nucleic binding domain-SM00443,SUPERFAMILY--SSF54928 no 0.68