Top cofit genes for mRNA_3025 from Rhodosporidium toruloides IFO0880

mRNA_3025 11393 : K11354 cph1 two-component system, chemotaxis family, sensor kinase Cph1

 

Rank Hit Name Description Conserved? Cofitness  
1 mRNA_2229 10597 HMMPfam-Hsp70 protein-PF00012,PRINTS-70kDa heat shock protein signature-PR00301,ProSitePatterns-Heat shock hsp70 proteins family signature 2.-PS00329,ProSitePatterns-Heat shock hsp70 proteins family signature 3.-PS01036,SUPERFAMILY--SSF100934,SUPERFAMILY--SSF53067 no 0.91
2 mRNA_2179 10547 K06681 LTE1 Gdp/GTP exchange factor required for growth at low temperatures no 0.79
3 mRNA_3322 11690 HMMPfam-Ribosomal RNA-processing protein 7 (RRP7)-PF12923 no 0.78
4 mRNA_4063 12431 K10777 LIG4, DNL4 DNA ligase 4 no 0.75
5 mRNA_426 8794 Hypothetical Protein no 0.74
6 mRNA_3843 12211 HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232 no 0.74
7 mRNA_1760 10128 KOG0940 Ubiquitin protein ligase RSP5/NEDD4 no 0.73
8 mRNA_3611 11979 Hypothetical Protein no 0.72
9 mRNA_3588 11956 KOG0254 Predicted transporter (major facilitator superfamily) no 0.72
10 mRNA_7141 15509 BLAST AP-4 complex subunit epsilon [Leucoagaricus sp. SymC.... no 0.71
11 mRNA_3056 11424 K11290 SET, TAF1, I2PP2A template-activating factor I no 0.71
12 mRNA_8198 16566 K03190 ureD, ureH urease accessory protein no 0.70
13 mRNA_5117 13485 KOG0254 Predicted transporter (major facilitator superfamily) no 0.70
14 mRNA_5978 14346 Hypothetical Protein no 0.69
15 mRNA_7357 15725 Hypothetical Protein no 0.69
16 mRNA_971 9339 KOG2262 Sexual differentiation process protein ISP4 no 0.69
17 mRNA_6484 14852 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 no 0.69
18 mRNA_49 8417 K03133 TAF9B, TAF9 transcription initiation factor TFIID subunit 9B no 0.69
19 mRNA_253 8621 KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins no 0.68
20 mRNA_3053 11421 K06889 K06889 uncharacterized protein no 0.68