Top cofit genes for mRNA_2026 from Rhodosporidium toruloides IFO0880

mRNA_2026 10394 : HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701

 

Rank Hit Name Description Conserved? Cofitness  
1 mRNA_8248 16616 KOG2945 Predicted RNA-binding protein no 0.82
2 mRNA_5873 14241 K00761 upp, UPRT uracil phosphoribosyltransferase no 0.80
3 mRNA_4538 12906 KOG2112 Lysophospholipase no 0.79
4 mRNA_1284 9652 K12897 TRA2 transformer-2 protein no 0.78
5 mRNA_5083 13451 Hypothetical Protein no 0.78
6 mRNA_4128 12496 K02926 RP-L4, MRPL4, rplD large subunit ribosomal protein L4 no 0.76
7 mRNA_6543 14911 K08712 ABCG2.SNQ2 ATP-binding cassette, subfamily G (WHITE), member 2, SNQ2 no 0.75
8 mRNA_8157 16525 ProSiteProfiles-DOMON domain profile.-PS50836,ProSiteProfiles-Cytochrome b561 domain profile.-PS50939,SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665,SUPERFAMILY--SSF49344 no 0.74
9 mRNA_7130 15498 KOG3077 Uncharacterized conserved protein no 0.74
10 mRNA_437 8805 Hypothetical Protein no 0.74
11 mRNA_3362 11730 BLAST vacuolar assembly/sorting protein DID2 [Moesziomyces ... no 0.74
12 mRNA_4713 13081 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 no 0.73
13 mRNA_5322 13690 K01120 cpdP 3',5'-cyclic-nucleotide phosphodiesterase no 0.73
14 mRNA_4394 12762 ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701 no 0.73
15 mRNA_1071 9439 K18757 LARP1 la-related protein 1 no 0.73
16 mRNA_1902 10270 KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif no 0.73
17 mRNA_4673 13041 K01069 E3.1.2.6, gloB hydroxyacylglutathione hydrolase no 0.73
18 mRNA_8365 16733 Hypothetical Protein no 0.73
19 mRNA_715 9083 KOG2893 Zn finger protein no 0.72
20 mRNA_3012 11380 K06269 PPP1C serine/threonine-protein phosphatase PP1 catalytic subunit no 0.72