Top cofit genes for mRNA_1927 from Rhodosporidium toruloides IFO0880

mRNA_1927 10295 : K19691 NIK1, TCSC osomolarity two-component system, sensor histidine kinase NIK1

 

Rank Hit Name Description Conserved? Cofitness  
1 mRNA_7079 15447 Hypothetical Protein no 0.77
2 mRNA_112 8480 K10899 RECQL ATP-dependent DNA helicase Q1 no 0.66
3 mRNA_6230 14598 K10688 UBE2W, UBC16 ubiquitin-conjugating enzyme E2 W no 0.65
4 mRNA_7278 15646 HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701 no 0.65
5 mRNA_5961 14329 HMMPfam-F-box-like-PF12937 no 0.64
6 mRNA_3646 12014 Hypothetical Protein no 0.63
7 mRNA_2663 11031 Hypothetical Protein no 0.63
8 mRNA_2680 11048 Hypothetical Protein no 0.63
9 mRNA_7525 15893 KOG3425 Uncharacterized conserved protein no 0.62
10 mRNA_4085 12453 Hypothetical Protein no 0.62
11 mRNA_3728 12096 K11142 LAP3 cytosol aminopeptidase no 0.61
12 mRNA_1497 9865 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 no 0.61
13 mRNA_217 8585 K02292 crtO beta-carotene ketolase (CrtO type) no 0.61
14 mRNA_2872 11240 HMMPfam-Pyridine nucleotide-disulphide oxidoreductase-PF00070,PRINTS-FAD-dependent pyridine nucleotide reductase signature-PR00368,PRINTS-Pyridine nucleotide disulphide reductase class-I signature-PR00411,SUPERFAMILY--SSF51905 no 0.61
15 mRNA_2199 10567 K05724 FGD5_6 FYVE, RhoGEF and PH domain containing 5/6 no 0.61
16 mRNA_2025 10393 SUPERFAMILY--SSF53474 no 0.60
17 mRNA_2581 10949 K06096 VAPA vesicle-associated membrane protein-associated protein A no 0.60
18 mRNA_6419 14787 KOG0744 AAA+-type ATPase no 0.59
19 mRNA_4120 12488 Hypothetical Protein no 0.58
20 mRNA_221 8589 HMMPfam-Squalene/phytoene synthase-PF00494,ProSitePatterns-Squalene and phytoene synthases signature 2.-PS01045,SUPERFAMILY--SSF48576,TIGRFAM-CarR_dom_SF lycopene cyclase domain-TIGR03462 no 0.58