Top cofit genes for mRNA_1879 from Rhodosporidium toruloides IFO0880

mRNA_1879 10247 : HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232

 

Rank Hit Name Description Conserved? Cofitness  
1 mRNA_8077 16445 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 no 0.82
2 mRNA_256 8624 K11254 H4 histone H4 no 0.80
3 mRNA_1218 9586 SUPERFAMILY--SSF52047 no 0.79
4 mRNA_925 9293 K10704 UBE2V ubiquitin-conjugating enzyme E2 variant no 0.78
5 mRNA_5688 14056 K12199 VTA1, LIP5 vacuolar protein sorting-associated protein VTA1 no 0.77
6 mRNA_3963 12331 HMMPfam-Domain of unknown function (DUF4504)-PF14953 no 0.76
7 mRNA_7306 15674 KOG1217 Fibrillins and related proteins containing Ca2+-binding EGF-like domains no 0.76
8 mRNA_3375 11743 Hypothetical Protein no 0.76
9 mRNA_308 8676 K07952 ARFRP1 ADP-ribosylation factor related protein 1 no 0.75
10 mRNA_1071 9439 K18757 LARP1 la-related protein 1 no 0.75
11 mRNA_1821 10189 HMMPfam-Domain of unknown function (DUF2427)-PF10348,HMMPfam-Protein of unknown function (Ytp1)-PF10355 no 0.74
12 mRNA_6257 14625 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701 no 0.73
13 mRNA_2804 11172 K10808 RRM2 ribonucleoside-diphosphate reductase subunit M2 no 0.73
14 mRNA_7253 15621 KOG2497 Predicted methyltransferase no 0.73
15 mRNA_1743 10111 HMMPfam-Protein of unknown function DUF262-PF03235 no 0.73
16 mRNA_6259 14627 HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713 no 0.73
17 mRNA_5717 14085 K20524 LSB5 LAS seventeen-binding protein 5 no 0.73
18 mRNA_1842 10210 K08660 CNDP2 cytosolic nonspecific dipeptidase no 0.73
19 mRNA_506 8874 K08793 STK32, YANK serine/threonine kinase 32 no 0.72
20 mRNA_1758 10126 KOG2998 Uncharacterized conserved protein no 0.72